Hb_001776_160

Information

Type -
Description -
Location Contig1776: 114214-119261
Sequence    

Annotation

kegg
ID tcc:TCM_041032
description 20S proteasome alpha subunit G1
nr
ID XP_007015404.1
description 20S proteasome alpha subunit G1 [Theobroma cacao]
swissprot
ID O23715
description Proteasome subunit alpha type-3 OS=Arabidopsis thaliana GN=PAG1 PE=1 SV=2
trembl
ID A0A061GUC3
description Proteasome subunit alpha type OS=Theobroma cacao GN=TCM_041032 PE=3 SV=1
Gene Ontology
ID GO:0019773
description proteasome subunit alpha type-3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17078: 114312-119123 , PASA_asmbl_17079: 114327-117150
cDNA
(Sanger)
(ID:Location)		 045_D14.ab1: 115144-119118 , 045_I19.ab1: 114697-119061

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001776_160 0.0 - - 20S proteasome alpha subunit G1 [Theobroma cacao]
2 Hb_006831_120 0.0576894095 - - PREDICTED: uncharacterized protein LOC105642121 isoform X1 [Jatropha curcas]
3 Hb_027654_050 0.0634169827 - - PREDICTED: uncharacterized protein LOC105646592 [Jatropha curcas]
4 Hb_001085_120 0.0654340933 - - PREDICTED: UV radiation resistance-associated gene protein isoform X1 [Jatropha curcas]
5 Hb_002110_200 0.0656663536 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial isoform X1 [Jatropha curcas]
6 Hb_001512_080 0.0699460091 - - PREDICTED: proteasome subunit beta type-7-B [Jatropha curcas]
7 Hb_002742_090 0.0734962204 - - PREDICTED: putative glucose-6-phosphate 1-epimerase [Jatropha curcas]
8 Hb_000086_280 0.0737406492 - - PREDICTED: vacuolar protein sorting-associated protein 2 homolog 3-like [Gossypium raimondii]
9 Hb_028515_010 0.0760076937 - - PREDICTED: protein DEFECTIVE IN MERISTEM SILENCING 3 isoform X1 [Jatropha curcas]
10 Hb_000224_140 0.079402934 - - ribonuclease z, chloroplast, putative [Ricinus communis]
11 Hb_068056_030 0.0794453631 - - ATP synthase epsilon chain, mitochondrial, putative [Ricinus communis]
12 Hb_000261_140 0.0810101658 - - -
13 Hb_017225_020 0.0815852226 - - PREDICTED: protein BRICK 1 [Gossypium raimondii]
14 Hb_000340_570 0.0831332739 - - PREDICTED: RNA-binding protein BRN1 [Jatropha curcas]
15 Hb_004889_010 0.0834296772 - - Vacuolar protein sorting-associated protein-like protein [Medicago truncatula]
16 Hb_001484_070 0.0834757685 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000638_250 0.0841964939 - - WD-repeat protein, putative [Ricinus communis]
18 Hb_000103_010 0.0843973399 - - 20S proteasome beta subunit D2 [Hevea brasiliensis]
19 Hb_010883_050 0.0846072406 - - PREDICTED: oxysterol-binding protein-related protein 1C-like isoform X1 [Jatropha curcas]
20 Hb_003540_030 0.0846182003 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001776_160 Hb_001776_160 Hb_006831_120 Hb_006831_120 Hb_001776_160--Hb_006831_120 Hb_027654_050 Hb_027654_050 Hb_001776_160--Hb_027654_050 Hb_001085_120 Hb_001085_120 Hb_001776_160--Hb_001085_120 Hb_002110_200 Hb_002110_200 Hb_001776_160--Hb_002110_200 Hb_001512_080 Hb_001512_080 Hb_001776_160--Hb_001512_080 Hb_002742_090 Hb_002742_090 Hb_001776_160--Hb_002742_090 Hb_000103_320 Hb_000103_320 Hb_006831_120--Hb_000103_320 Hb_000638_250 Hb_000638_250 Hb_006831_120--Hb_000638_250 Hb_000340_570 Hb_000340_570 Hb_006831_120--Hb_000340_570 Hb_028872_080 Hb_028872_080 Hb_006831_120--Hb_028872_080 Hb_000140_050 Hb_000140_050 Hb_006831_120--Hb_000140_050 Hb_017225_020 Hb_017225_020 Hb_027654_050--Hb_017225_020 Hb_027654_050--Hb_001512_080 Hb_027654_050--Hb_002110_200 Hb_001904_090 Hb_001904_090 Hb_027654_050--Hb_001904_090 Hb_000254_050 Hb_000254_050 Hb_027654_050--Hb_000254_050 Hb_000453_120 Hb_000453_120 Hb_001085_120--Hb_000453_120 Hb_000103_010 Hb_000103_010 Hb_001085_120--Hb_000103_010 Hb_001484_070 Hb_001484_070 Hb_001085_120--Hb_001484_070 Hb_001085_120--Hb_001512_080 Hb_000417_360 Hb_000417_360 Hb_001085_120--Hb_000417_360 Hb_002110_200--Hb_000254_050 Hb_002110_200--Hb_001512_080 Hb_000789_230 Hb_000789_230 Hb_002110_200--Hb_000789_230 Hb_002110_200--Hb_000453_120 Hb_000224_140 Hb_000224_140 Hb_001512_080--Hb_000224_140 Hb_001512_080--Hb_000254_050 Hb_001512_080--Hb_000453_120 Hb_000817_030 Hb_000817_030 Hb_002742_090--Hb_000817_030 Hb_000120_020 Hb_000120_020 Hb_002742_090--Hb_000120_020 Hb_028515_010 Hb_028515_010 Hb_002742_090--Hb_028515_010 Hb_002742_090--Hb_002110_200 Hb_068056_030 Hb_068056_030 Hb_002742_090--Hb_068056_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
44.833 21.976 47.7197 53.6224 27.8098 40.329
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
90.3772 136.712 113.121 48.7027 42.5468

CAGE analysis