Hb_001776_170

Information

Type -
Description -
Location Contig1776: 119724-127008
Sequence    

Annotation

kegg
ID rcu:RCOM_0206230
description hypothetical protein
nr
ID XP_002528011.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9ZQ34
description Uncharacterized protein At2g24330 OS=Arabidopsis thaliana GN=At2g24330 PE=2 SV=1
trembl
ID B9SPU2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0206230 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17082: 120997-126958 , PASA_asmbl_17084: 127970-128275
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001776_170 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002067_140 0.1074393066 - - -
3 Hb_001369_600 0.1235186399 - - kinase, putative [Ricinus communis]
4 Hb_012053_050 0.1270625868 - - PREDICTED: UDP-D-apiose/UDP-D-xylose synthase 2 [Jatropha curcas]
5 Hb_001511_140 0.1283608536 - - PREDICTED: RING-H2 finger protein ATL66 [Jatropha curcas]
6 Hb_002759_240 0.1368583999 - - hypothetical protein EUGRSUZ_E01319 [Eucalyptus grandis]
7 Hb_000979_250 0.1524689723 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000809_030 0.1533148024 desease resistance Gene Name: RPW8 PREDICTED: probable disease resistance protein At5g66900 [Prunus mume]
9 Hb_000103_550 0.1535823029 - - PREDICTED: guanine nucleotide-binding protein subunit gamma 2 isoform X1 [Jatropha curcas]
10 Hb_012053_040 0.1550768163 - - PREDICTED: putative phospholipid:diacylglycerol acyltransferase 2 [Jatropha curcas]
11 Hb_001369_450 0.1567878915 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
12 Hb_000270_620 0.159005327 - - PREDICTED: succinate dehydrogenase subunit 7B, mitochondrial-like isoform X1 [Jatropha curcas]
13 Hb_001488_370 0.1591434602 - - Esterase PIR7B, putative [Ricinus communis]
14 Hb_002105_030 0.1611552428 - - -
15 Hb_000123_160 0.1613034072 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
16 Hb_062135_020 0.1632185426 - - PREDICTED: probable histone H2A variant 3 [Nicotiana sylvestris]
17 Hb_000373_180 0.1632856818 transcription factor TF Family: Trihelix hypothetical protein JCGZ_25182 [Jatropha curcas]
18 Hb_001396_090 0.1647262501 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 75 [Jatropha curcas]
19 Hb_001052_030 0.1684981475 - - PREDICTED: protein TIC 20-IV, chloroplastic [Jatropha curcas]
20 Hb_001894_170 0.1704603638 - - PREDICTED: pantothenate kinase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_001776_170 Hb_001776_170 Hb_002067_140 Hb_002067_140 Hb_001776_170--Hb_002067_140 Hb_001369_600 Hb_001369_600 Hb_001776_170--Hb_001369_600 Hb_012053_050 Hb_012053_050 Hb_001776_170--Hb_012053_050 Hb_001511_140 Hb_001511_140 Hb_001776_170--Hb_001511_140 Hb_002759_240 Hb_002759_240 Hb_001776_170--Hb_002759_240 Hb_000979_250 Hb_000979_250 Hb_001776_170--Hb_000979_250 Hb_002067_140--Hb_001369_600 Hb_002067_140--Hb_012053_050 Hb_001369_450 Hb_001369_450 Hb_002067_140--Hb_001369_450 Hb_001488_370 Hb_001488_370 Hb_002067_140--Hb_001488_370 Hb_000094_110 Hb_000094_110 Hb_002067_140--Hb_000094_110 Hb_001369_600--Hb_012053_050 Hb_001369_600--Hb_001488_370 Hb_007426_050 Hb_007426_050 Hb_001369_600--Hb_007426_050 Hb_000589_160 Hb_000589_160 Hb_001369_600--Hb_000589_160 Hb_012053_050--Hb_000589_160 Hb_000373_180 Hb_000373_180 Hb_012053_050--Hb_000373_180 Hb_012053_050--Hb_002759_240 Hb_012053_050--Hb_001488_370 Hb_000788_080 Hb_000788_080 Hb_001511_140--Hb_000788_080 Hb_001511_140--Hb_000979_250 Hb_012053_040 Hb_012053_040 Hb_001511_140--Hb_012053_040 Hb_001511_140--Hb_002759_240 Hb_000592_060 Hb_000592_060 Hb_001511_140--Hb_000592_060 Hb_001894_170 Hb_001894_170 Hb_002759_240--Hb_001894_170 Hb_001846_070 Hb_001846_070 Hb_002759_240--Hb_001846_070 Hb_000264_020 Hb_000264_020 Hb_002759_240--Hb_000264_020 Hb_146225_010 Hb_146225_010 Hb_002759_240--Hb_146225_010 Hb_005841_040 Hb_005841_040 Hb_002759_240--Hb_005841_040 Hb_001052_030 Hb_001052_030 Hb_002759_240--Hb_001052_030 Hb_008066_030 Hb_008066_030 Hb_000979_250--Hb_008066_030 Hb_000613_160 Hb_000613_160 Hb_000979_250--Hb_000613_160 Hb_003198_010 Hb_003198_010 Hb_000979_250--Hb_003198_010 Hb_000979_250--Hb_001488_370
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.1956 9.06785 3.45821 13.4107 5.2546 3.57619
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
52.6607 168.717 107.131 23.926 5.55788

CAGE analysis