Hb_001777_030

Information

Type -
Description -
Location Contig1777: 80444-84373
Sequence    

Annotation

kegg
ID rcu:RCOM_1096970
description S-locus-specific glycoprotein S6 precursor, putative (EC:2.7.10.2)
nr
ID XP_012091449.1
description PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]
swissprot
ID O64781
description G-type lectin S-receptor-like serine/threonine-protein kinase At1g61390 OS=Arabidopsis thaliana GN=At1g61390 PE=2 SV=1
trembl
ID A0A067JDL7
description Serine/threonine-protein kinase OS=Jatropha curcas GN=JCGZ_21324 PE=3 SV=1
Gene Ontology
ID GO:0004674
description s-locus-specific glycoprotein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17094: 80424-84323
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001777_030 0.0 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]
2 Hb_003767_060 0.1011934433 - - PREDICTED: serine/threonine-protein kinase CDL1 [Jatropha curcas]
3 Hb_002818_160 0.1029685326 - - PREDICTED: uncharacterized protein LOC105642722 [Jatropha curcas]
4 Hb_000167_100 0.1057422972 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
5 Hb_006106_010 0.1061662902 transcription factor TF Family: TCP transcription factor, putative [Ricinus communis]
6 Hb_000031_320 0.1080143889 - - unnamed protein product [Vitis vinifera]
7 Hb_000186_180 0.1148356193 - - PREDICTED: uncharacterized protein LOC105649287 [Jatropha curcas]
8 Hb_001677_170 0.1179422199 - - hypothetical protein M569_03661, partial [Genlisea aurea]
9 Hb_003654_020 0.1206908834 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
10 Hb_003209_150 0.1222074373 - - CLE9, putative [Ricinus communis]
11 Hb_002307_120 0.1226569289 - - scab resistance family protein [Populus trichocarpa]
12 Hb_004017_030 0.1250504616 - - PREDICTED: 2-hydroxyisoflavanone dehydratase-like [Jatropha curcas]
13 Hb_003373_050 0.1265054213 - - receptor protein kinase zmpk1, putative [Ricinus communis]
14 Hb_046739_010 0.1287482034 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 isoform X1 [Jatropha curcas]
15 Hb_006188_020 0.1302076413 - - PREDICTED: uncharacterized protein LOC105646403 [Jatropha curcas]
16 Hb_002010_030 0.1318504516 - - Phytosulfokine receptor precursor, putative [Ricinus communis]
17 Hb_001369_340 0.1324632663 - - Peroxisomal membrane protein 11B [Theobroma cacao]
18 Hb_000343_050 0.1338614862 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000732_300 0.1347445588 - - PREDICTED: uncharacterized protein LOC105649465 isoform X2 [Jatropha curcas]
20 Hb_002284_160 0.134990411 - - glyceraldehyde 3-phosphate dehydrogenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001777_030 Hb_001777_030 Hb_003767_060 Hb_003767_060 Hb_001777_030--Hb_003767_060 Hb_002818_160 Hb_002818_160 Hb_001777_030--Hb_002818_160 Hb_000167_100 Hb_000167_100 Hb_001777_030--Hb_000167_100 Hb_006106_010 Hb_006106_010 Hb_001777_030--Hb_006106_010 Hb_000031_320 Hb_000031_320 Hb_001777_030--Hb_000031_320 Hb_000186_180 Hb_000186_180 Hb_001777_030--Hb_000186_180 Hb_001369_340 Hb_001369_340 Hb_003767_060--Hb_001369_340 Hb_002010_030 Hb_002010_030 Hb_003767_060--Hb_002010_030 Hb_004017_030 Hb_004017_030 Hb_003767_060--Hb_004017_030 Hb_003209_150 Hb_003209_150 Hb_003767_060--Hb_003209_150 Hb_007462_020 Hb_007462_020 Hb_003767_060--Hb_007462_020 Hb_003767_060--Hb_002818_160 Hb_002307_120 Hb_002307_120 Hb_002818_160--Hb_002307_120 Hb_002818_160--Hb_000031_320 Hb_002818_160--Hb_000186_180 Hb_002818_160--Hb_003209_150 Hb_003654_020 Hb_003654_020 Hb_002818_160--Hb_003654_020 Hb_000167_100--Hb_000031_320 Hb_000167_100--Hb_000186_180 Hb_019863_050 Hb_019863_050 Hb_000167_100--Hb_019863_050 Hb_000167_100--Hb_003654_020 Hb_000815_090 Hb_000815_090 Hb_000167_100--Hb_000815_090 Hb_006106_010--Hb_003767_060 Hb_006106_010--Hb_002010_030 Hb_004109_140 Hb_004109_140 Hb_006106_010--Hb_004109_140 Hb_006106_010--Hb_001369_340 Hb_000483_470 Hb_000483_470 Hb_006106_010--Hb_000483_470 Hb_005433_020 Hb_005433_020 Hb_006106_010--Hb_005433_020 Hb_046739_010 Hb_046739_010 Hb_000031_320--Hb_046739_010 Hb_001677_170 Hb_001677_170 Hb_000031_320--Hb_001677_170 Hb_011028_030 Hb_011028_030 Hb_000031_320--Hb_011028_030 Hb_002407_090 Hb_002407_090 Hb_000031_320--Hb_002407_090 Hb_003970_010 Hb_003970_010 Hb_000031_320--Hb_003970_010 Hb_000186_180--Hb_003654_020 Hb_000186_180--Hb_000031_320 Hb_000186_180--Hb_002307_120 Hb_000186_180--Hb_001677_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0352114 4.16496 8.14404 2.9165 0.0263632 0.357739
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0159757 0 0 0.104768 8.64854

CAGE analysis