Hb_001779_050

Information

Type -
Description -
Location Contig1779: 59582-64324
Sequence    

Annotation

kegg
ID tcc:TCM_009998
description DNA/RNA polymerases superfamily protein
nr
ID CAA73042.1
description polyprotein [Ananas comosus]
swissprot
ID P0CT39
description Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-6 PE=3 SV=1
trembl
ID O64892
description Polyprotein (Fragment) OS=Ananas comosus PE=4 SV=1
Gene Ontology
ID GO:0043231
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001779_050 0.0 - - polyprotein [Ananas comosus]
2 Hb_176140_010 0.0009244222 - - polyprotein [Oryza australiensis]
3 Hb_001338_010 0.0125533542 transcription factor TF Family: GNAT GCN5-related N-acetyltransferase family protein [Populus trichocarpa]
4 Hb_000031_070 0.0173204478 - - Thioredoxin domain-containing protein, putative [Ricinus communis]
5 Hb_158575_010 0.0253905347 - - conserved hypothetical protein [Ricinus communis]
6 Hb_157680_010 0.0259889882 - - PREDICTED: uncharacterized protein LOC103444007 [Malus domestica]
7 Hb_004453_120 0.0288556365 - - ammonium transporter, putative [Ricinus communis]
8 Hb_003882_030 0.0468892795 - - putative retrotransposon protein [Phyllostachys edulis]
9 Hb_002874_250 0.051643732 - - -
10 Hb_000010_230 0.0533976436 - - PREDICTED: F-box/WD repeat-containing protein 11-like [Jatropha curcas]
11 Hb_003477_020 0.0649925704 desease resistance Gene Name: AAA_29 PREDICTED: ABC transporter G family member 15-like [Populus euphratica]
12 Hb_151061_040 0.0703194266 - - putative retrotransposon protein [Phyllostachys edulis]
13 Hb_004138_020 0.0843398601 - - PREDICTED: cucumisin-like [Populus euphratica]
14 Hb_005087_020 0.0848573963 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
15 Hb_001081_070 0.0935083385 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
16 Hb_184398_010 0.102799567 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
17 Hb_125153_010 0.1052124572 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1 [Malus domestica]
18 Hb_001681_010 0.1065249341 - - PREDICTED: cytochrome P450 81E8-like isoform X1 [Populus euphratica]
19 Hb_054839_010 0.1085572641 - - PsbC, partial (chloroplast) [Asimina parviflora]
20 Hb_007645_040 0.1106461602 - - ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Tachigali myrmecophila]

Gene co-expression network

sample Hb_001779_050 Hb_001779_050 Hb_176140_010 Hb_176140_010 Hb_001779_050--Hb_176140_010 Hb_001338_010 Hb_001338_010 Hb_001779_050--Hb_001338_010 Hb_000031_070 Hb_000031_070 Hb_001779_050--Hb_000031_070 Hb_158575_010 Hb_158575_010 Hb_001779_050--Hb_158575_010 Hb_157680_010 Hb_157680_010 Hb_001779_050--Hb_157680_010 Hb_004453_120 Hb_004453_120 Hb_001779_050--Hb_004453_120 Hb_176140_010--Hb_001338_010 Hb_176140_010--Hb_000031_070 Hb_176140_010--Hb_158575_010 Hb_176140_010--Hb_157680_010 Hb_176140_010--Hb_004453_120 Hb_001338_010--Hb_000031_070 Hb_001338_010--Hb_158575_010 Hb_001338_010--Hb_157680_010 Hb_001338_010--Hb_004453_120 Hb_000031_070--Hb_158575_010 Hb_000031_070--Hb_157680_010 Hb_000031_070--Hb_004453_120 Hb_158575_010--Hb_157680_010 Hb_158575_010--Hb_004453_120 Hb_003882_030 Hb_003882_030 Hb_158575_010--Hb_003882_030 Hb_002874_250 Hb_002874_250 Hb_158575_010--Hb_002874_250 Hb_157680_010--Hb_004453_120 Hb_157680_010--Hb_003882_030 Hb_157680_010--Hb_002874_250 Hb_004453_120--Hb_003882_030 Hb_004453_120--Hb_002874_250 Hb_000010_230 Hb_000010_230 Hb_004453_120--Hb_000010_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.00464724 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0713185

CAGE analysis