Hb_001780_020

Information

Type -
Description -
Location Contig1780: 4814-6768
Sequence    

Annotation

kegg
ID rcu:RCOM_0731420
description hypothetical protein
nr
ID XP_002520457.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S388
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0731420 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17106: 4879-6462
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001780_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_006588_200 0.0740353225 - - 3-beta-hydroxy-delta5-steroid dehydrogenase, putative [Ricinus communis]
3 Hb_000402_080 0.0812335182 - - PREDICTED: pentatricopeptide repeat-containing protein At1g60770 [Jatropha curcas]
4 Hb_004195_200 0.0826389017 - - glycosyl transferase family 1 family protein [Populus trichocarpa]
5 Hb_002375_010 0.0838212068 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X1 [Jatropha curcas]
6 Hb_001347_040 0.0851219303 - - PREDICTED: uncharacterized protein LOC105633920 [Jatropha curcas]
7 Hb_002248_080 0.0853302324 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 25 isoform X2 [Jatropha curcas]
8 Hb_002652_030 0.0865557541 - - PREDICTED: U3 small nucleolar RNA-interacting protein 2-like [Jatropha curcas]
9 Hb_000928_220 0.0867409634 - - PREDICTED: protein SCAI [Jatropha curcas]
10 Hb_003528_010 0.089079621 transcription factor TF Family: MYB PREDICTED: myb-related protein 3R-1 [Jatropha curcas]
11 Hb_000120_430 0.089387046 - - PREDICTED: serine/threonine-protein phosphatase 7 [Jatropha curcas]
12 Hb_001408_040 0.0903034795 - - PREDICTED: MACPF domain-containing protein At4g24290 isoform X2 [Jatropha curcas]
13 Hb_000070_080 0.0904736276 - - PREDICTED: uncharacterized protein LOC105645742 isoform X2 [Jatropha curcas]
14 Hb_002835_230 0.0923854741 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
15 Hb_000152_380 0.0929840968 - - PREDICTED: hypersensitive-induced response protein 4 [Jatropha curcas]
16 Hb_000130_240 0.0933832712 - - hypothetical protein RCOM_1520720 [Ricinus communis]
17 Hb_002078_110 0.0934909229 - - PREDICTED: nuclear pore complex protein NUP54 [Jatropha curcas]
18 Hb_010381_090 0.0944915386 - - PREDICTED: protein FLX-like 3 [Jatropha curcas]
19 Hb_000256_190 0.0953792814 - - PREDICTED: pentatricopeptide repeat-containing protein At1g66345, mitochondrial [Jatropha curcas]
20 Hb_112798_020 0.0958203251 - - dnajc14 protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001780_020 Hb_001780_020 Hb_006588_200 Hb_006588_200 Hb_001780_020--Hb_006588_200 Hb_000402_080 Hb_000402_080 Hb_001780_020--Hb_000402_080 Hb_004195_200 Hb_004195_200 Hb_001780_020--Hb_004195_200 Hb_002375_010 Hb_002375_010 Hb_001780_020--Hb_002375_010 Hb_001347_040 Hb_001347_040 Hb_001780_020--Hb_001347_040 Hb_002248_080 Hb_002248_080 Hb_001780_020--Hb_002248_080 Hb_003185_010 Hb_003185_010 Hb_006588_200--Hb_003185_010 Hb_003549_150 Hb_003549_150 Hb_006588_200--Hb_003549_150 Hb_003528_010 Hb_003528_010 Hb_006588_200--Hb_003528_010 Hb_034552_030 Hb_034552_030 Hb_006588_200--Hb_034552_030 Hb_003994_230 Hb_003994_230 Hb_006588_200--Hb_003994_230 Hb_000928_220 Hb_000928_220 Hb_000402_080--Hb_000928_220 Hb_000076_160 Hb_000076_160 Hb_000402_080--Hb_000076_160 Hb_001104_160 Hb_001104_160 Hb_000402_080--Hb_001104_160 Hb_008453_140 Hb_008453_140 Hb_000402_080--Hb_008453_140 Hb_002876_130 Hb_002876_130 Hb_000402_080--Hb_002876_130 Hb_000696_230 Hb_000696_230 Hb_000402_080--Hb_000696_230 Hb_004195_200--Hb_002375_010 Hb_004195_200--Hb_001104_160 Hb_007576_110 Hb_007576_110 Hb_004195_200--Hb_007576_110 Hb_000366_120 Hb_000366_120 Hb_004195_200--Hb_000366_120 Hb_020831_030 Hb_020831_030 Hb_004195_200--Hb_020831_030 Hb_003640_040 Hb_003640_040 Hb_004195_200--Hb_003640_040 Hb_000390_320 Hb_000390_320 Hb_002375_010--Hb_000390_320 Hb_000347_070 Hb_000347_070 Hb_002375_010--Hb_000347_070 Hb_002375_010--Hb_007576_110 Hb_000617_180 Hb_000617_180 Hb_002375_010--Hb_000617_180 Hb_002784_020 Hb_002784_020 Hb_002375_010--Hb_002784_020 Hb_131646_010 Hb_131646_010 Hb_001347_040--Hb_131646_010 Hb_143395_010 Hb_143395_010 Hb_001347_040--Hb_143395_010 Hb_001377_070 Hb_001377_070 Hb_001347_040--Hb_001377_070 Hb_003124_220 Hb_003124_220 Hb_001347_040--Hb_003124_220 Hb_000256_190 Hb_000256_190 Hb_001347_040--Hb_000256_190 Hb_002078_110 Hb_002078_110 Hb_001347_040--Hb_002078_110 Hb_112798_020 Hb_112798_020 Hb_002248_080--Hb_112798_020 Hb_000152_380 Hb_000152_380 Hb_002248_080--Hb_000152_380 Hb_000096_070 Hb_000096_070 Hb_002248_080--Hb_000096_070 Hb_004310_150 Hb_004310_150 Hb_002248_080--Hb_004310_150 Hb_000780_230 Hb_000780_230 Hb_002248_080--Hb_000780_230 Hb_031527_040 Hb_031527_040 Hb_002248_080--Hb_031527_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.60463 7.20166 6.19642 6.00804 9.79815 6.84747
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.17169 7.62945 6.89673 7.66428 2.50326

CAGE analysis