Hb_001780_030

Information

Type -
Description -
Location Contig1780: 11176-17042
Sequence    

Annotation

kegg
ID rcu:RCOM_0731410
description receptor protein kinase, putative
nr
ID XP_012068547.1
description PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
swissprot
ID Q9FHD7
description Probable serine/threonine-protein kinase At5g41260 OS=Arabidopsis thaliana GN=At5g41260 PE=1 SV=1
trembl
ID A0A067LPV3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08551 PE=4 SV=1
Gene Ontology
ID GO:0004672
description probable serine threonine-protein kinase at5g41260

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17107: 11387-17027
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001780_030 0.0 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
2 Hb_000028_490 0.1198191646 - - calmodulin-like protein 6a [Populus trichocarpa]
3 Hb_000244_150 0.1294658122 - - PREDICTED: chromatin assembly factor 1 subunit FAS2 [Jatropha curcas]
4 Hb_000483_080 0.1546384574 - - hypothetical protein CISIN_1g000833mg [Citrus sinensis]
5 Hb_001322_160 0.1563577766 - - hypothetical protein JCGZ_03472 [Jatropha curcas]
6 Hb_008725_070 0.1563919402 - - Cellulose synthase A catalytic subunit 3 [UDP-forming], putative [Ricinus communis]
7 Hb_000077_110 0.1590611385 - - PREDICTED: uncharacterized protein LOC105646935 [Jatropha curcas]
8 Hb_000960_090 0.1631513186 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000032_250 0.1655811976 - - PREDICTED: endoglucanase 6 [Jatropha curcas]
10 Hb_002965_160 0.1662685308 - - PREDICTED: uncharacterized protein LOC105643503 [Jatropha curcas]
11 Hb_001123_310 0.1685605348 - - PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]
12 Hb_007590_110 0.1704616335 - - PREDICTED: putative serine/threonine-protein kinase-like protein CCR3 [Jatropha curcas]
13 Hb_022693_110 0.1710059521 - - phosphate transporter [Manihot esculenta]
14 Hb_000834_180 0.1710452206 - - PREDICTED: kinesin-13A-like isoform X1 [Jatropha curcas]
15 Hb_001450_040 0.1720263691 - - PREDICTED: tubulin alpha-2 chain [Jatropha curcas]
16 Hb_001348_010 0.1735361039 - - PREDICTED: lysM domain-containing GPI-anchored protein 1 [Jatropha curcas]
17 Hb_000046_240 0.1748243688 - - PREDICTED: uncharacterized protein LOC105631837 [Jatropha curcas]
18 Hb_003728_110 0.1750151673 - - PREDICTED: calmodulin-like protein 3 [Populus euphratica]
19 Hb_003540_120 0.1754343274 - - calmodulin binding protein, putative [Ricinus communis]
20 Hb_004531_080 0.1754444161 - - hypothetical protein RCOM_1491960 [Ricinus communis]

Gene co-expression network

sample Hb_001780_030 Hb_001780_030 Hb_000028_490 Hb_000028_490 Hb_001780_030--Hb_000028_490 Hb_000244_150 Hb_000244_150 Hb_001780_030--Hb_000244_150 Hb_000483_080 Hb_000483_080 Hb_001780_030--Hb_000483_080 Hb_001322_160 Hb_001322_160 Hb_001780_030--Hb_001322_160 Hb_008725_070 Hb_008725_070 Hb_001780_030--Hb_008725_070 Hb_000077_110 Hb_000077_110 Hb_001780_030--Hb_000077_110 Hb_127416_010 Hb_127416_010 Hb_000028_490--Hb_127416_010 Hb_183086_070 Hb_183086_070 Hb_000028_490--Hb_183086_070 Hb_005333_080 Hb_005333_080 Hb_000028_490--Hb_005333_080 Hb_000032_250 Hb_000032_250 Hb_000028_490--Hb_000032_250 Hb_007044_220 Hb_007044_220 Hb_000028_490--Hb_007044_220 Hb_002662_040 Hb_002662_040 Hb_000244_150--Hb_002662_040 Hb_000244_150--Hb_001322_160 Hb_013726_010 Hb_013726_010 Hb_000244_150--Hb_013726_010 Hb_000244_150--Hb_000028_490 Hb_004531_080 Hb_004531_080 Hb_000244_150--Hb_004531_080 Hb_001123_310 Hb_001123_310 Hb_000483_080--Hb_001123_310 Hb_000120_300 Hb_000120_300 Hb_000483_080--Hb_000120_300 Hb_000483_080--Hb_000077_110 Hb_000483_080--Hb_004531_080 Hb_002871_130 Hb_002871_130 Hb_000483_080--Hb_002871_130 Hb_002284_260 Hb_002284_260 Hb_000483_080--Hb_002284_260 Hb_020301_020 Hb_020301_020 Hb_001322_160--Hb_020301_020 Hb_000661_150 Hb_000661_150 Hb_001322_160--Hb_000661_150 Hb_000003_060 Hb_000003_060 Hb_001322_160--Hb_000003_060 Hb_001322_160--Hb_002284_260 Hb_007632_210 Hb_007632_210 Hb_001322_160--Hb_007632_210 Hb_005183_150 Hb_005183_150 Hb_001322_160--Hb_005183_150 Hb_004147_070 Hb_004147_070 Hb_008725_070--Hb_004147_070 Hb_006289_020 Hb_006289_020 Hb_008725_070--Hb_006289_020 Hb_000540_160 Hb_000540_160 Hb_008725_070--Hb_000540_160 Hb_008725_070--Hb_000028_490 Hb_000960_090 Hb_000960_090 Hb_008725_070--Hb_000960_090 Hb_000307_220 Hb_000307_220 Hb_000077_110--Hb_000307_220 Hb_000566_130 Hb_000566_130 Hb_000077_110--Hb_000566_130 Hb_093458_020 Hb_093458_020 Hb_000077_110--Hb_093458_020 Hb_004920_050 Hb_004920_050 Hb_000077_110--Hb_004920_050 Hb_000077_110--Hb_002284_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.37033 1.2338 15.7606 16.7546 0.606218 0.561638
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.282903 0.185494 2.14338 6.73293 4.03299

CAGE analysis