Hb_001780_050

Information

Type -
Description -
Location Contig1780: 19993-21769
Sequence    

Annotation

kegg
ID pop:POPTR_0001s25380g
description POPTRDRAFT_641125; DNA-directed RNA polymerase I(A) and III(C) 14 kDa subunit family protein
nr
ID XP_012068526.1
description PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2 [Jatropha curcas]
swissprot
ID P28000
description DNA-directed RNA polymerases I and III subunit RPAC2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPC19 PE=1 SV=1
trembl
ID B9GIX0
description DNA-directed RNA polymerase I(A) and III(C) 14 kDa subunit family protein OS=Populus trichocarpa GN=POPTR_0001s25380g PE=4 SV=1
Gene Ontology
ID GO:0003677
description dna-directed rna polymerases i and iii subunit rpac2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17110: 20017-21777
cDNA
(Sanger)
(ID:Location)		 016_G03.ab1: 20017-21777 , 017_N06r.ab1: 17979-19696

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001780_050 0.0 - - PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2 [Jatropha curcas]
2 Hb_000163_130 0.043319209 - - hypothetical protein CICLE_v10022870mg [Citrus clementina]
3 Hb_005914_200 0.0530193515 - - PREDICTED: 60S ribosomal protein L23-like isoform X1 [Tarenaya hassleriana]
4 Hb_004754_070 0.0621370563 - - PREDICTED: 60S ribosomal protein L30-like [Gossypium raimondii]
5 Hb_000236_150 0.0657645633 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
6 Hb_012539_020 0.0673479786 - - protein binding/ubiquitin-protein ligase 4 [Hevea brasiliensis]
7 Hb_012395_130 0.0686804687 - - Os02g0814700 [Oryza sativa Japonica Group]
8 Hb_000367_210 0.0754431 - - PREDICTED: dolichol-phosphate mannosyltransferase subunit 3 [Jatropha curcas]
9 Hb_000389_080 0.0761941333 - - PREDICTED: uncharacterized protein At4g26485-like [Jatropha curcas]
10 Hb_000905_180 0.0785997902 - - 60S ribosomal protein L31A [Hevea brasiliensis]
11 Hb_000300_390 0.0812055103 - - BTB/POZ domain-containing protein KCTD9, putative [Ricinus communis]
12 Hb_002316_120 0.0824904967 - - hypothetical protein POPTR_0015s08460g [Populus trichocarpa]
13 Hb_006588_080 0.0834228859 - - hypothetical protein JCGZ_25746 [Jatropha curcas]
14 Hb_002835_320 0.0844685629 - - 60S ribosomal protein L27B [Hevea brasiliensis]
15 Hb_000881_080 0.0849771799 - - conserved hypothetical protein [Ricinus communis]
16 Hb_011377_020 0.085312117 - - hypothetical protein CARUB_v10018269mg, partial [Capsella rubella]
17 Hb_120823_010 0.0894973042 - - -
18 Hb_005474_060 0.090127299 - - hypothetical protein PHAVU_011G019700g [Phaseolus vulgaris]
19 Hb_004007_180 0.0905082504 - - PREDICTED: uncharacterized protein LOC105639838 [Jatropha curcas]
20 Hb_003053_030 0.0914361406 - - PREDICTED: transport and Golgi organization 2 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_001780_050 Hb_001780_050 Hb_000163_130 Hb_000163_130 Hb_001780_050--Hb_000163_130 Hb_005914_200 Hb_005914_200 Hb_001780_050--Hb_005914_200 Hb_004754_070 Hb_004754_070 Hb_001780_050--Hb_004754_070 Hb_000236_150 Hb_000236_150 Hb_001780_050--Hb_000236_150 Hb_012539_020 Hb_012539_020 Hb_001780_050--Hb_012539_020 Hb_012395_130 Hb_012395_130 Hb_001780_050--Hb_012395_130 Hb_002835_320 Hb_002835_320 Hb_000163_130--Hb_002835_320 Hb_000905_180 Hb_000905_180 Hb_000163_130--Hb_000905_180 Hb_000163_130--Hb_004754_070 Hb_000163_130--Hb_000236_150 Hb_003053_030 Hb_003053_030 Hb_000163_130--Hb_003053_030 Hb_005914_200--Hb_000236_150 Hb_005914_200--Hb_012539_020 Hb_005914_200--Hb_004754_070 Hb_005914_200--Hb_000163_130 Hb_000976_250 Hb_000976_250 Hb_005914_200--Hb_000976_250 Hb_004754_070--Hb_012395_130 Hb_011377_020 Hb_011377_020 Hb_004754_070--Hb_011377_020 Hb_004007_180 Hb_004007_180 Hb_004754_070--Hb_004007_180 Hb_000224_090 Hb_000224_090 Hb_000236_150--Hb_000224_090 Hb_000236_150--Hb_000905_180 Hb_000236_150--Hb_012539_020 Hb_000389_080 Hb_000389_080 Hb_012539_020--Hb_000389_080 Hb_000300_390 Hb_000300_390 Hb_012539_020--Hb_000300_390 Hb_002316_120 Hb_002316_120 Hb_012539_020--Hb_002316_120 Hb_005663_120 Hb_005663_120 Hb_012539_020--Hb_005663_120 Hb_012395_130--Hb_011377_020 Hb_172221_010 Hb_172221_010 Hb_012395_130--Hb_172221_010 Hb_000997_120 Hb_000997_120 Hb_012395_130--Hb_000997_120 Hb_007120_090 Hb_007120_090 Hb_012395_130--Hb_007120_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.1059 8.96123 17.9458 38.6168 24.126 46.4061
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
110.203 197.436 79.2866 41.4117 19.089

CAGE analysis