Hb_001780_060

Information

Type -
Description -
Location Contig1780: 22046-25900
Sequence    

Annotation

kegg
ID pop:POPTR_0009s04470g
description POPTRDRAFT_203513; hypothetical protein
nr
ID XP_012068519.1
description PREDICTED: uncharacterized protein LOC105631129 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A9PE12
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s04470g PE=2 SV=1
Gene Ontology
ID GO:0008270
description protein binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17112: 22129-25580 , PASA_asmbl_17113: 25583-25782
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001780_060 0.0 - - PREDICTED: uncharacterized protein LOC105631129 [Jatropha curcas]
2 Hb_001454_390 0.0976969908 - - 8-kd dynein light chain, DLC8, pin [Thalassiosira pseudonana CCMP1335]
3 Hb_004738_090 0.1022800707 - - conserved hypothetical protein [Ricinus communis]
4 Hb_004545_150 0.1069095494 - - PREDICTED: paramyosin [Jatropha curcas]
5 Hb_000500_310 0.1071888474 - - -
6 Hb_002875_090 0.1125069938 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
7 Hb_003906_120 0.1159141943 - - -
8 Hb_003636_090 0.1166756177 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3-like [Jatropha curcas]
9 Hb_000270_400 0.1167876911 - - lipase, putative [Ricinus communis]
10 Hb_003018_180 0.1168372397 - - PREDICTED: WEB family protein At3g51220-like [Jatropha curcas]
11 Hb_116701_020 0.1209633756 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003304_080 0.1265175212 transcription factor TF Family: bHLH lMYC3 [Hevea brasiliensis]
13 Hb_000523_020 0.127421866 - - PREDICTED: uncharacterized protein LOC105650610 [Jatropha curcas]
14 Hb_095397_010 0.1305057655 - - hypothetical protein 25 [Hevea brasiliensis]
15 Hb_010931_100 0.1332236938 - - PREDICTED: uncharacterized protein LOC105638669 [Jatropha curcas]
16 Hb_000264_190 0.1341973578 - - sphingolipid delta 4 desaturase/C-4 hydroxylase protein des2, putative [Ricinus communis]
17 Hb_002232_180 0.1357299813 - - PREDICTED: DUF21 domain-containing protein At2g14520-like isoform X1 [Populus euphratica]
18 Hb_007810_040 0.1365631566 - - PREDICTED: dolichyl-phosphate beta-glucosyltransferase [Jatropha curcas]
19 Hb_010098_080 0.137248172 - - PREDICTED: non-specific phospholipase C4-like [Jatropha curcas]
20 Hb_000753_260 0.138628268 transcription factor TF Family: MIKC MADS-box transcription factor 3 [Hevea brasiliensis]

Gene co-expression network

sample Hb_001780_060 Hb_001780_060 Hb_001454_390 Hb_001454_390 Hb_001780_060--Hb_001454_390 Hb_004738_090 Hb_004738_090 Hb_001780_060--Hb_004738_090 Hb_004545_150 Hb_004545_150 Hb_001780_060--Hb_004545_150 Hb_000500_310 Hb_000500_310 Hb_001780_060--Hb_000500_310 Hb_002875_090 Hb_002875_090 Hb_001780_060--Hb_002875_090 Hb_003906_120 Hb_003906_120 Hb_001780_060--Hb_003906_120 Hb_000590_090 Hb_000590_090 Hb_001454_390--Hb_000590_090 Hb_170116_010 Hb_170116_010 Hb_001454_390--Hb_170116_010 Hb_001454_390--Hb_002875_090 Hb_003253_010 Hb_003253_010 Hb_001454_390--Hb_003253_010 Hb_000038_130 Hb_000038_130 Hb_001454_390--Hb_000038_130 Hb_002067_160 Hb_002067_160 Hb_004738_090--Hb_002067_160 Hb_000085_340 Hb_000085_340 Hb_004738_090--Hb_000085_340 Hb_000264_190 Hb_000264_190 Hb_004738_090--Hb_000264_190 Hb_002232_180 Hb_002232_180 Hb_004738_090--Hb_002232_180 Hb_010931_100 Hb_010931_100 Hb_004738_090--Hb_010931_100 Hb_178968_150 Hb_178968_150 Hb_004738_090--Hb_178968_150 Hb_004545_150--Hb_010931_100 Hb_002609_260 Hb_002609_260 Hb_004545_150--Hb_002609_260 Hb_002989_080 Hb_002989_080 Hb_004545_150--Hb_002989_080 Hb_004545_150--Hb_000264_190 Hb_005488_100 Hb_005488_100 Hb_004545_150--Hb_005488_100 Hb_000563_540 Hb_000563_540 Hb_004545_150--Hb_000563_540 Hb_000500_310--Hb_004738_090 Hb_001140_160 Hb_001140_160 Hb_000500_310--Hb_001140_160 Hb_010098_080 Hb_010098_080 Hb_000500_310--Hb_010098_080 Hb_000500_310--Hb_004545_150 Hb_000500_310--Hb_002609_260 Hb_003636_090 Hb_003636_090 Hb_002875_090--Hb_003636_090 Hb_000352_150 Hb_000352_150 Hb_002875_090--Hb_000352_150 Hb_002875_090--Hb_170116_010 Hb_003304_080 Hb_003304_080 Hb_002875_090--Hb_003304_080 Hb_003906_110 Hb_003906_110 Hb_003906_120--Hb_003906_110 Hb_003906_120--Hb_002232_180 Hb_095397_010 Hb_095397_010 Hb_003906_120--Hb_095397_010 Hb_003906_120--Hb_002609_260 Hb_003906_120--Hb_010931_100 Hb_003906_120--Hb_004545_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
178.35 3.61373 4.59886 1.64077 113.06 72.7957
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
106.508 40.3626 58.6659 5.81089 2.8401

CAGE analysis