Hb_001780_070

Information

Type -
Description -
Location Contig1780: 27250-28430
Sequence    

Annotation

kegg
ID rcu:RCOM_0731380
description hypothetical protein
nr
ID KDP46577.1
description hypothetical protein JCGZ_08549 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LDT3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08549 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17114: 27081-27434 , PASA_asmbl_17115: 27069-28155 , PASA_asmbl_17116: 28172-28461
cDNA
(Sanger)
(ID:Location)		 019_A01.ab1: 27081-27430 , 032_B21.ab1: 27081-27430 , 036_M22.ab1: 27106-27434 , 041_K21.ab1: 27105-27393 , 043_L05.ab1: 27105-27393

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001780_070 0.0 - - hypothetical protein JCGZ_08549 [Jatropha curcas]
2 Hb_000175_610 0.1637785334 transcription factor TF Family: Tify PREDICTED: protein TIFY 8 isoform X3 [Jatropha curcas]
3 Hb_003286_020 0.1680808215 - - hypothetical protein POPTR_0007s05070g [Populus trichocarpa]
4 Hb_005616_030 0.1806469239 - - PREDICTED: wall-associated receptor kinase-like 1 [Eucalyptus grandis]
5 Hb_001741_090 0.1827342176 rubber biosynthesis Gene Name: SRPP1 RecName: Full=Small rubber particle protein; Short=SRPP; AltName: Full=22 kDa rubber particle protein; Short=22 kDa RPP; AltName: Full=27 kDa natural rubber allergen; AltName: Full=Latex allergen Hev b 3; AltName: Allergen=Hev b 3 [Hevea brasiliensis]
6 Hb_075449_050 0.185361554 - - PREDICTED: premnaspirodiene oxygenase-like [Jatropha curcas]
7 Hb_000107_070 0.1859875291 - - PREDICTED: uncharacterized protein LOC105641007 [Jatropha curcas]
8 Hb_001671_060 0.1883373071 - - fad NAD binding oxidoreductases, putative [Ricinus communis]
9 Hb_000545_170 0.1898603173 - - PREDICTED: putative calcium-transporting ATPase 11, plasma membrane-type isoform X2 [Jatropha curcas]
10 Hb_006018_030 0.192071129 - - PREDICTED: uncharacterized protein LOC105108875 isoform X1 [Populus euphratica]
11 Hb_001157_220 0.1969418929 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000120_360 0.1982542382 - - conserved hypothetical protein [Ricinus communis]
13 Hb_098315_030 0.1991083366 - - PREDICTED: putative glutamine amidotransferase YLR126C [Jatropha curcas]
14 Hb_028285_030 0.2014058102 - - PREDICTED: protein GLUTAMINE DUMPER 1-like [Elaeis guineensis]
15 Hb_000235_010 0.2018218964 - - PREDICTED: serine carboxypeptidase-like 18 [Jatropha curcas]
16 Hb_002000_110 0.2019124399 - - ASR-like protein 2 [Hevea brasiliensis]
17 Hb_000614_100 0.2072085512 - - 3-oxoacyl-[acyl-carrier-protein] reductase [Populus trichocarpa]
18 Hb_104010_010 0.2135610704 - - hypothetical protein JCGZ_26423 [Jatropha curcas]
19 Hb_001959_260 0.2139042013 - - -
20 Hb_003050_070 0.216177191 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001780_070 Hb_001780_070 Hb_000175_610 Hb_000175_610 Hb_001780_070--Hb_000175_610 Hb_003286_020 Hb_003286_020 Hb_001780_070--Hb_003286_020 Hb_005616_030 Hb_005616_030 Hb_001780_070--Hb_005616_030 Hb_001741_090 Hb_001741_090 Hb_001780_070--Hb_001741_090 Hb_075449_050 Hb_075449_050 Hb_001780_070--Hb_075449_050 Hb_000107_070 Hb_000107_070 Hb_001780_070--Hb_000107_070 Hb_011004_010 Hb_011004_010 Hb_000175_610--Hb_011004_010 Hb_000260_580 Hb_000260_580 Hb_000175_610--Hb_000260_580 Hb_003371_100 Hb_003371_100 Hb_000175_610--Hb_003371_100 Hb_000742_270 Hb_000742_270 Hb_000175_610--Hb_000742_270 Hb_001507_070 Hb_001507_070 Hb_000175_610--Hb_001507_070 Hb_148121_010 Hb_148121_010 Hb_000175_610--Hb_148121_010 Hb_173281_010 Hb_173281_010 Hb_003286_020--Hb_173281_010 Hb_004800_020 Hb_004800_020 Hb_003286_020--Hb_004800_020 Hb_003286_020--Hb_000175_610 Hb_000235_010 Hb_000235_010 Hb_003286_020--Hb_000235_010 Hb_000545_170 Hb_000545_170 Hb_003286_020--Hb_000545_170 Hb_002780_050 Hb_002780_050 Hb_005616_030--Hb_002780_050 Hb_008864_060 Hb_008864_060 Hb_005616_030--Hb_008864_060 Hb_000617_290 Hb_000617_290 Hb_005616_030--Hb_000617_290 Hb_001959_260 Hb_001959_260 Hb_005616_030--Hb_001959_260 Hb_000720_190 Hb_000720_190 Hb_005616_030--Hb_000720_190 Hb_001741_090--Hb_148121_010 Hb_001035_040 Hb_001035_040 Hb_001741_090--Hb_001035_040 Hb_001741_090--Hb_000107_070 Hb_002235_230 Hb_002235_230 Hb_001741_090--Hb_002235_230 Hb_149683_010 Hb_149683_010 Hb_001741_090--Hb_149683_010 Hb_002000_110 Hb_002000_110 Hb_001741_090--Hb_002000_110 Hb_075449_050--Hb_002000_110 Hb_075449_050--Hb_000107_070 Hb_006018_030 Hb_006018_030 Hb_075449_050--Hb_006018_030 Hb_075449_050--Hb_002235_230 Hb_023214_010 Hb_023214_010 Hb_075449_050--Hb_023214_010 Hb_075449_050--Hb_001741_090 Hb_000107_070--Hb_023214_010 Hb_000107_070--Hb_001035_040 Hb_000107_070--Hb_002000_110 Hb_003020_310 Hb_003020_310 Hb_000107_070--Hb_003020_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.3807 0.0433923 1.93068 1.64937 4.68565 2.34799
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
106.039 21.7151 40.6991 3.7338 1.06224

CAGE analysis