Hb_001780_080

Information

Type -
Description -
Location Contig1780: 59318-64233
Sequence    

Annotation

kegg
ID rcu:RCOM_1495920
description tubulin beta chain, putative
nr
ID XP_012068515.1
description PREDICTED: tubulin beta-2 chain [Jatropha curcas]
swissprot
ID P29516
description Tubulin beta-8 chain OS=Arabidopsis thaliana GN=TUBB8 PE=2 SV=2
trembl
ID A0A067LDL3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08548 PE=3 SV=1
Gene Ontology
ID GO:0005874
description tubulin beta-1 chain

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17117: 62541-64300
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001780_080 0.0 - - PREDICTED: tubulin beta-2 chain [Jatropha curcas]
2 Hb_001478_020 0.1092010225 desease resistance Gene Name: AAA thyroid hormone receptor interactor, putative [Ricinus communis]
3 Hb_003784_040 0.1100268943 - - Afadin- and alpha-actinin-binding protein, putative [Ricinus communis]
4 Hb_010180_030 0.1101311037 - - PREDICTED: WEB family protein At2g38370-like [Jatropha curcas]
5 Hb_001501_070 0.1133154289 - - PREDICTED: condensin complex subunit 2 [Jatropha curcas]
6 Hb_000139_280 0.1249839543 - - PREDICTED: mitogen-activated protein kinase kinase kinase NPK1 isoform X1 [Jatropha curcas]
7 Hb_000365_210 0.1298690955 - - PREDICTED: cell division control protein 2 homolog C [Jatropha curcas]
8 Hb_005504_040 0.1335093793 - - conserved hypothetical protein [Ricinus communis]
9 Hb_038044_010 0.1359197278 - - 12-oxophytodienoate reductase 2 [Theobroma cacao]
10 Hb_000500_340 0.1393460577 - - PREDICTED: exonuclease 1 [Jatropha curcas]
11 Hb_002007_040 0.1395998785 - - unnamed protein product [Coffea canephora]
12 Hb_002307_020 0.1398797238 - - PREDICTED: histone H1-like [Jatropha curcas]
13 Hb_000288_090 0.1446442007 - - unnamed protein product [Vitis vinifera]
14 Hb_029510_130 0.1453898428 - - PREDICTED: malonate--CoA ligase [Jatropha curcas]
15 Hb_005725_150 0.145456697 - - PREDICTED: kinesin-related protein 11 isoform X1 [Jatropha curcas]
16 Hb_001584_360 0.1487643659 - - PREDICTED: serine/threonine-protein kinase haspin homolog hrk1 [Jatropha curcas]
17 Hb_006275_060 0.1552609288 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
18 Hb_002007_280 0.1563802252 - - PREDICTED: kinesin-like protein KIFC3 [Jatropha curcas]
19 Hb_093458_020 0.1577567127 desease resistance Gene Name: AAA PREDICTED: chromosome transmission fidelity protein 18 homolog [Jatropha curcas]
20 Hb_000003_060 0.1599607341 transcription factor TF Family: HMG DNA-binding protein MNB1B, putative [Ricinus communis]

Gene co-expression network

sample Hb_001780_080 Hb_001780_080 Hb_001478_020 Hb_001478_020 Hb_001780_080--Hb_001478_020 Hb_003784_040 Hb_003784_040 Hb_001780_080--Hb_003784_040 Hb_010180_030 Hb_010180_030 Hb_001780_080--Hb_010180_030 Hb_001501_070 Hb_001501_070 Hb_001780_080--Hb_001501_070 Hb_000139_280 Hb_000139_280 Hb_001780_080--Hb_000139_280 Hb_000365_210 Hb_000365_210 Hb_001780_080--Hb_000365_210 Hb_001478_020--Hb_010180_030 Hb_001478_020--Hb_001501_070 Hb_038044_010 Hb_038044_010 Hb_001478_020--Hb_038044_010 Hb_001478_020--Hb_003784_040 Hb_029510_130 Hb_029510_130 Hb_001478_020--Hb_029510_130 Hb_005504_040 Hb_005504_040 Hb_003784_040--Hb_005504_040 Hb_003784_040--Hb_010180_030 Hb_003784_040--Hb_000139_280 Hb_005725_150 Hb_005725_150 Hb_003784_040--Hb_005725_150 Hb_010180_030--Hb_001501_070 Hb_010180_030--Hb_005725_150 Hb_010180_030--Hb_005504_040 Hb_001501_070--Hb_038044_010 Hb_001501_070--Hb_000365_210 Hb_001501_070--Hb_029510_130 Hb_024973_020 Hb_024973_020 Hb_001501_070--Hb_024973_020 Hb_000139_280--Hb_005504_040 Hb_000190_220 Hb_000190_220 Hb_000139_280--Hb_000190_220 Hb_000260_040 Hb_000260_040 Hb_000139_280--Hb_000260_040 Hb_006275_060 Hb_006275_060 Hb_000139_280--Hb_006275_060 Hb_000288_090 Hb_000288_090 Hb_000365_210--Hb_000288_090 Hb_001761_010 Hb_001761_010 Hb_000365_210--Hb_001761_010 Hb_008406_100 Hb_008406_100 Hb_000365_210--Hb_008406_100 Hb_001584_360 Hb_001584_360 Hb_000365_210--Hb_001584_360 Hb_000028_530 Hb_000028_530 Hb_000365_210--Hb_000028_530
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.48676 3.44653 85.9427 31.4821 1.51442 1.7275
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.08342 9.4777 4.44941 13.5304 4.82288

CAGE analysis