Hb_001780_090

Information

Type -
Description -
Location Contig1780: 73068-80944
Sequence    

Annotation

kegg
ID rcu:RCOM_0731250
description hypothetical protein
nr
ID XP_012068492.1
description PREDICTED: uncharacterized protein LOC105631099 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LNX5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08547 PE=4 SV=1
Gene Ontology
ID GO:0004842
description trithorax group protein osa-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17122: 75193-78345 , PASA_asmbl_17123: 78484-80861 , PASA_asmbl_17124: 78484-80894
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001780_090 0.0 - - PREDICTED: uncharacterized protein LOC105631099 isoform X1 [Jatropha curcas]
2 Hb_005701_070 0.1017132325 - - PREDICTED: uncharacterized TPR repeat-containing protein At1g05150-like [Jatropha curcas]
3 Hb_000574_070 0.1061560784 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 35 [Jatropha curcas]
4 Hb_000540_060 0.1069306095 - - PREDICTED: uncharacterized protein LOC105628177 [Jatropha curcas]
5 Hb_000158_100 0.11062613 - - conserved hypothetical protein [Ricinus communis]
6 Hb_003623_030 0.1118896257 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 14 [Jatropha curcas]
7 Hb_032631_040 0.1121034725 - - PREDICTED: uncharacterized protein LOC105638769 [Jatropha curcas]
8 Hb_002400_240 0.1138689407 - - PREDICTED: uncharacterized protein LOC105637615 [Jatropha curcas]
9 Hb_000162_020 0.1142374756 - - protein translocase, putative [Ricinus communis]
10 Hb_001900_110 0.1188489538 - - PREDICTED: replication protein A 70 kDa DNA-binding subunit E [Jatropha curcas]
11 Hb_002762_130 0.1197901736 - - PREDICTED: protein MODIFIER OF SNC1 1 [Jatropha curcas]
12 Hb_000544_050 0.1207346208 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
13 Hb_008494_010 0.1208465217 - - PREDICTED: uncharacterized protein LOC105636015 [Jatropha curcas]
14 Hb_001913_060 0.1218672979 - - PREDICTED: splicing factor 3B subunit 3-like [Jatropha curcas]
15 Hb_000061_510 0.1250770547 - - hypothetical protein JCGZ_11686 [Jatropha curcas]
16 Hb_000136_060 0.1264281999 - - hypothetical protein POPTR_0016s06250g [Populus trichocarpa]
17 Hb_141547_010 0.1268666365 - - PREDICTED: ARF guanine-nucleotide exchange factor GNOM [Jatropha curcas]
18 Hb_000788_070 0.1271469975 - - PREDICTED: pentatricopeptide repeat-containing protein At1g10270 [Jatropha curcas]
19 Hb_018133_050 0.1279465178 - - PREDICTED: protein MODIFIER OF SNC1 1 [Jatropha curcas]
20 Hb_116929_010 0.1300691469 - - PREDICTED: nuclear-pore anchor isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001780_090 Hb_001780_090 Hb_005701_070 Hb_005701_070 Hb_001780_090--Hb_005701_070 Hb_000574_070 Hb_000574_070 Hb_001780_090--Hb_000574_070 Hb_000540_060 Hb_000540_060 Hb_001780_090--Hb_000540_060 Hb_000158_100 Hb_000158_100 Hb_001780_090--Hb_000158_100 Hb_003623_030 Hb_003623_030 Hb_001780_090--Hb_003623_030 Hb_032631_040 Hb_032631_040 Hb_001780_090--Hb_032631_040 Hb_000446_120 Hb_000446_120 Hb_005701_070--Hb_000446_120 Hb_030627_060 Hb_030627_060 Hb_005701_070--Hb_030627_060 Hb_002400_240 Hb_002400_240 Hb_005701_070--Hb_002400_240 Hb_002784_110 Hb_002784_110 Hb_005701_070--Hb_002784_110 Hb_000406_020 Hb_000406_020 Hb_005701_070--Hb_000406_020 Hb_025194_040 Hb_025194_040 Hb_005701_070--Hb_025194_040 Hb_001472_090 Hb_001472_090 Hb_000574_070--Hb_001472_090 Hb_003488_030 Hb_003488_030 Hb_000574_070--Hb_003488_030 Hb_001700_040 Hb_001700_040 Hb_000574_070--Hb_001700_040 Hb_000544_050 Hb_000544_050 Hb_000574_070--Hb_000544_050 Hb_001913_060 Hb_001913_060 Hb_000574_070--Hb_001913_060 Hb_010417_050 Hb_010417_050 Hb_000574_070--Hb_010417_050 Hb_001967_030 Hb_001967_030 Hb_000540_060--Hb_001967_030 Hb_000540_060--Hb_025194_040 Hb_000540_060--Hb_002784_110 Hb_007576_120 Hb_007576_120 Hb_000540_060--Hb_007576_120 Hb_005496_110 Hb_005496_110 Hb_000540_060--Hb_005496_110 Hb_000540_060--Hb_001472_090 Hb_000743_050 Hb_000743_050 Hb_000158_100--Hb_000743_050 Hb_000158_100--Hb_003623_030 Hb_000136_060 Hb_000136_060 Hb_000158_100--Hb_000136_060 Hb_002028_170 Hb_002028_170 Hb_000158_100--Hb_002028_170 Hb_000739_220 Hb_000739_220 Hb_000158_100--Hb_000739_220 Hb_001900_110 Hb_001900_110 Hb_000158_100--Hb_001900_110 Hb_002551_070 Hb_002551_070 Hb_003623_030--Hb_002551_070 Hb_003623_030--Hb_002028_170 Hb_000107_040 Hb_000107_040 Hb_003623_030--Hb_000107_040 Hb_116929_010 Hb_116929_010 Hb_003623_030--Hb_116929_010 Hb_003623_030--Hb_032631_040 Hb_032631_040--Hb_002551_070 Hb_117552_010 Hb_117552_010 Hb_032631_040--Hb_117552_010 Hb_009476_040 Hb_009476_040 Hb_032631_040--Hb_009476_040 Hb_002974_060 Hb_002974_060 Hb_032631_040--Hb_002974_060 Hb_032631_040--Hb_005701_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.9987 36.8228 3.96282 10.5438 23.898 46.8954
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.4556 6.18729 16.6604 25.0722 24.3278

CAGE analysis