Hb_001780_120

Information

Type -
Description -
Location Contig1780: 106813-107784
Sequence    

Annotation

kegg
ID mtr:MTR_3g008420
description 60S ribosomal protein L23
nr
ID XP_012072680.1
description PREDICTED: uncharacterized protein LOC105634429 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9SZ30
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0494170 PE=4 SV=1
Gene Ontology
ID GO:0003676
description 60s ribosomal protein l23

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001780_120 0.0 - - PREDICTED: uncharacterized protein LOC105634429 [Jatropha curcas]
2 Hb_001523_020 0.1771888034 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like isoform X3 [Citrus sinensis]
3 Hb_119504_010 0.1873711569 - - hypothetical protein JCGZ_15304 [Jatropha curcas]
4 Hb_001222_050 0.1956387547 - - hypothetical protein CICLE_v100161911mg, partial [Citrus clementina]
5 Hb_001035_070 0.197021281 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF5.7 [Jatropha curcas]
6 Hb_000422_120 0.2034506544 - - PREDICTED: 1-phosphatidylinositol-3-phosphate 5-kinase FAB1B [Jatropha curcas]
7 Hb_004553_020 0.2052247761 - - PREDICTED: non-structural maintenance of chromosomes element 1 homolog [Jatropha curcas]
8 Hb_069251_010 0.207415744 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
9 Hb_001277_090 0.210181708 - - PREDICTED: uncharacterized protein LOC105632061 [Jatropha curcas]
10 Hb_001357_010 0.2178564012 - - -
11 Hb_029510_040 0.2194449673 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g23330 [Vitis vinifera]
12 Hb_000856_150 0.2248890245 - - PREDICTED: pentatricopeptide repeat-containing protein At1g18900 [Jatropha curcas]
13 Hb_000141_030 0.226441131 - - PREDICTED: scarecrow-like protein 22 [Jatropha curcas]
14 Hb_011316_020 0.2272557187 - - PREDICTED: uncharacterized protein LOC105648558 [Jatropha curcas]
15 Hb_020334_010 0.2300879291 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
16 Hb_007181_020 0.2312854385 - - PREDICTED: uncharacterized protein At4g04980-like [Populus euphratica]
17 Hb_002513_030 0.2345074397 - - PREDICTED: alpha-L-fucosidase 2-like isoform X2 [Elaeis guineensis]
18 Hb_009005_050 0.2382605217 - - neutral/alkaline invertase 3 [Hevea brasiliensis]
19 Hb_001294_010 0.2382881311 - - PREDICTED: E3 ubiquitin-protein ligase RNF170-like [Jatropha curcas]
20 Hb_002078_480 0.2396074757 - - hypothetical protein CICLE_v10033318mg [Citrus clementina]

Gene co-expression network

sample Hb_001780_120 Hb_001780_120 Hb_001523_020 Hb_001523_020 Hb_001780_120--Hb_001523_020 Hb_119504_010 Hb_119504_010 Hb_001780_120--Hb_119504_010 Hb_001222_050 Hb_001222_050 Hb_001780_120--Hb_001222_050 Hb_001035_070 Hb_001035_070 Hb_001780_120--Hb_001035_070 Hb_000422_120 Hb_000422_120 Hb_001780_120--Hb_000422_120 Hb_004553_020 Hb_004553_020 Hb_001780_120--Hb_004553_020 Hb_036311_020 Hb_036311_020 Hb_001523_020--Hb_036311_020 Hb_054127_050 Hb_054127_050 Hb_001523_020--Hb_054127_050 Hb_001523_020--Hb_001222_050 Hb_000362_120 Hb_000362_120 Hb_001523_020--Hb_000362_120 Hb_130194_010 Hb_130194_010 Hb_001523_020--Hb_130194_010 Hb_007181_020 Hb_007181_020 Hb_119504_010--Hb_007181_020 Hb_094900_010 Hb_094900_010 Hb_119504_010--Hb_094900_010 Hb_009005_050 Hb_009005_050 Hb_119504_010--Hb_009005_050 Hb_000915_030 Hb_000915_030 Hb_119504_010--Hb_000915_030 Hb_000679_220 Hb_000679_220 Hb_119504_010--Hb_000679_220 Hb_005224_010 Hb_005224_010 Hb_001222_050--Hb_005224_010 Hb_011316_020 Hb_011316_020 Hb_001222_050--Hb_011316_020 Hb_000922_390 Hb_000922_390 Hb_001222_050--Hb_000922_390 Hb_000010_410 Hb_000010_410 Hb_001222_050--Hb_000010_410 Hb_003333_050 Hb_003333_050 Hb_001222_050--Hb_003333_050 Hb_000599_350 Hb_000599_350 Hb_001222_050--Hb_000599_350 Hb_001053_150 Hb_001053_150 Hb_001035_070--Hb_001053_150 Hb_004429_070 Hb_004429_070 Hb_001035_070--Hb_004429_070 Hb_000141_030 Hb_000141_030 Hb_001035_070--Hb_000141_030 Hb_001277_090 Hb_001277_090 Hb_001035_070--Hb_001277_090 Hb_002078_480 Hb_002078_480 Hb_001035_070--Hb_002078_480 Hb_029510_040 Hb_029510_040 Hb_001035_070--Hb_029510_040 Hb_004724_230 Hb_004724_230 Hb_000422_120--Hb_004724_230 Hb_001817_020 Hb_001817_020 Hb_000422_120--Hb_001817_020 Hb_073452_010 Hb_073452_010 Hb_000422_120--Hb_073452_010 Hb_000422_120--Hb_054127_050 Hb_000827_060 Hb_000827_060 Hb_000422_120--Hb_000827_060 Hb_004553_020--Hb_000362_120 Hb_005188_090 Hb_005188_090 Hb_004553_020--Hb_005188_090 Hb_005043_010 Hb_005043_010 Hb_004553_020--Hb_005043_010 Hb_000172_560 Hb_000172_560 Hb_004553_020--Hb_000172_560 Hb_001616_120 Hb_001616_120 Hb_004553_020--Hb_001616_120 Hb_005701_010 Hb_005701_010 Hb_004553_020--Hb_005701_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.177457 0.131459 0.0578686 0.142322 0.0745038 0.498692
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.856742 0.673472 3.94662 1.01575 1.06003

CAGE analysis