Hb_001781_020

Information

Type -
Description -
Location Contig1781: 43300-46789
Sequence    

Annotation

kegg
ID sly:101256147
description pyruvate kinase, cytosolic isozyme-like
nr
ID XP_012090125.1
description PREDICTED: pyruvate kinase, cytosolic isozyme-like [Jatropha curcas]
swissprot
ID P22200
description Pyruvate kinase, cytosolic isozyme OS=Solanum tuberosum PE=2 SV=1
trembl
ID K4D530
description Pyruvate kinase OS=Solanum lycopersicum GN=Solyc11g007690.1 PE=3 SV=1
Gene Ontology
ID GO:0000287
description pyruvate cytosolic isozyme-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17129: 9261-46879 , PASA_asmbl_17130: 46158-46670
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001781_020 0.0 - - PREDICTED: pyruvate kinase, cytosolic isozyme-like [Jatropha curcas]
2 Hb_002027_190 0.1029079579 - - PREDICTED: autophagy-related protein 18g [Jatropha curcas]
3 Hb_000649_060 0.1093397738 - - PREDICTED: E3 ubiquitin protein ligase RIE1 [Jatropha curcas]
4 Hb_004019_120 0.1096526739 - - PREDICTED: conserved oligomeric Golgi complex subunit 1 [Jatropha curcas]
5 Hb_004411_030 0.1100041256 - - hypothetical protein POPTR_0017s00310g [Populus trichocarpa]
6 Hb_103684_010 0.1147967106 - - PREDICTED: cullin-1 isoform X3 [Nicotiana tomentosiformis]
7 Hb_041327_010 0.1157182315 - - PREDICTED: la-related protein 1A isoform X1 [Jatropha curcas]
8 Hb_001511_180 0.1172621715 - - Clathrin heavy chain 2 -like protein [Gossypium arboreum]
9 Hb_000261_480 0.1174392725 - - 26S proteasome regulatory subunit family protein [Populus trichocarpa]
10 Hb_007747_170 0.1178802761 - - PREDICTED: uncharacterized protein At5g41620 [Jatropha curcas]
11 Hb_001369_360 0.1184725651 - - embryo yellow protein, partial [Manihot esculenta]
12 Hb_001821_150 0.1193256173 - - PREDICTED: potassium transporter 7-like [Jatropha curcas]
13 Hb_000123_180 0.1202959295 - - 2-oxoglutarate dehydrogenase, putative [Ricinus communis]
14 Hb_000512_030 0.1216101149 - - wall-associated kinase, putative [Ricinus communis]
15 Hb_000556_220 0.1218659109 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 2-like [Jatropha curcas]
16 Hb_015292_060 0.1227031355 - - PREDICTED: pentatricopeptide repeat-containing protein At5g38730 [Jatropha curcas]
17 Hb_000080_110 0.1240359077 - - PREDICTED: GPI ethanolamine phosphate transferase 3 isoform X1 [Jatropha curcas]
18 Hb_001377_350 0.1242890009 - - PREDICTED: exportin-2 [Jatropha curcas]
19 Hb_003280_020 0.124452078 - - PREDICTED: enhancer of mRNA-decapping protein 4 isoform X1 [Jatropha curcas]
20 Hb_001642_070 0.124580622 - - PREDICTED: uncharacterized protein LOC105646431 [Jatropha curcas]

Gene co-expression network

sample Hb_001781_020 Hb_001781_020 Hb_002027_190 Hb_002027_190 Hb_001781_020--Hb_002027_190 Hb_000649_060 Hb_000649_060 Hb_001781_020--Hb_000649_060 Hb_004019_120 Hb_004019_120 Hb_001781_020--Hb_004019_120 Hb_004411_030 Hb_004411_030 Hb_001781_020--Hb_004411_030 Hb_103684_010 Hb_103684_010 Hb_001781_020--Hb_103684_010 Hb_041327_010 Hb_041327_010 Hb_001781_020--Hb_041327_010 Hb_000321_090 Hb_000321_090 Hb_002027_190--Hb_000321_090 Hb_002851_010 Hb_002851_010 Hb_002027_190--Hb_002851_010 Hb_000080_110 Hb_000080_110 Hb_002027_190--Hb_000080_110 Hb_020805_180 Hb_020805_180 Hb_002027_190--Hb_020805_180 Hb_033799_010 Hb_033799_010 Hb_002027_190--Hb_033799_010 Hb_007747_170 Hb_007747_170 Hb_002027_190--Hb_007747_170 Hb_001587_030 Hb_001587_030 Hb_000649_060--Hb_001587_030 Hb_001226_130 Hb_001226_130 Hb_000649_060--Hb_001226_130 Hb_000649_060--Hb_020805_180 Hb_000890_070 Hb_000890_070 Hb_000649_060--Hb_000890_070 Hb_004450_070 Hb_004450_070 Hb_000649_060--Hb_004450_070 Hb_000152_700 Hb_000152_700 Hb_000649_060--Hb_000152_700 Hb_009296_040 Hb_009296_040 Hb_004019_120--Hb_009296_040 Hb_000230_260 Hb_000230_260 Hb_004019_120--Hb_000230_260 Hb_000556_220 Hb_000556_220 Hb_004019_120--Hb_000556_220 Hb_001377_350 Hb_001377_350 Hb_004019_120--Hb_001377_350 Hb_001195_470 Hb_001195_470 Hb_004019_120--Hb_001195_470 Hb_000140_210 Hb_000140_210 Hb_004019_120--Hb_000140_210 Hb_004411_030--Hb_041327_010 Hb_000037_220 Hb_000037_220 Hb_004411_030--Hb_000037_220 Hb_001754_040 Hb_001754_040 Hb_004411_030--Hb_001754_040 Hb_140049_080 Hb_140049_080 Hb_004411_030--Hb_140049_080 Hb_000003_100 Hb_000003_100 Hb_004411_030--Hb_000003_100 Hb_019840_030 Hb_019840_030 Hb_004411_030--Hb_019840_030 Hb_000237_050 Hb_000237_050 Hb_103684_010--Hb_000237_050 Hb_003544_050 Hb_003544_050 Hb_103684_010--Hb_003544_050 Hb_019280_010 Hb_019280_010 Hb_103684_010--Hb_019280_010 Hb_003097_140 Hb_003097_140 Hb_103684_010--Hb_003097_140 Hb_012114_100 Hb_012114_100 Hb_103684_010--Hb_012114_100 Hb_001369_360 Hb_001369_360 Hb_103684_010--Hb_001369_360 Hb_002639_080 Hb_002639_080 Hb_041327_010--Hb_002639_080 Hb_012286_040 Hb_012286_040 Hb_041327_010--Hb_012286_040 Hb_000261_480 Hb_000261_480 Hb_041327_010--Hb_000261_480 Hb_041327_010--Hb_000230_260 Hb_000069_120 Hb_000069_120 Hb_041327_010--Hb_000069_120 Hb_000537_050 Hb_000537_050 Hb_041327_010--Hb_000537_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.75667 9.7016 5.23139 11.8656 7.17659 7.25401
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.79722 1.48944 9.77932 17.0304 10.4141

CAGE analysis