Hb_001782_100

Information

Type -
Description -
Location Contig1782: 233163-238546
Sequence    

Annotation

kegg
ID rcu:RCOM_1162380
description hydrolase, hydrolyzing O-glycosyl compounds, putative (EC:3.2.1.21)
nr
ID XP_002523935.1
description hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
swissprot
ID A7LXU3
description Beta-glucosidase BoGH3B OS=Bacteroides ovatus (strain ATCC 8483 / DSM 1896 / JCM 5824 / NCTC 11153) GN=BACOVA_02659 PE=1 SV=1
trembl
ID B9SD66
description Hydrolase, hydrolyzing O-glycosyl compounds, putative OS=Ricinus communis GN=RCOM_1162380 PE=4 SV=1
Gene Ontology
ID GO:0004553
description lysosomal beta glucosidase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17136: 233183-238527
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001782_100 0.0 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
2 Hb_006351_030 0.0839269032 - - PREDICTED: E3 ubiquitin-protein ligase MARCH8-like [Jatropha curcas]
3 Hb_000152_590 0.0922642676 - - PREDICTED: 21 kDa protein [Jatropha curcas]
4 Hb_007590_110 0.1042972755 - - PREDICTED: putative serine/threonine-protein kinase-like protein CCR3 [Jatropha curcas]
5 Hb_024682_030 0.1065963236 - - PREDICTED: DNA replication licensing factor MCM2 [Jatropha curcas]
6 Hb_010672_010 0.1076650076 - - hypothetical protein JCGZ_00895 [Jatropha curcas]
7 Hb_000535_040 0.1137140794 - - PREDICTED: uncharacterized protein LOC105642104 [Jatropha curcas]
8 Hb_000592_100 0.1158273715 - - PREDICTED: thaumatin-like protein [Jatropha curcas]
9 Hb_129996_010 0.1181870858 - - hypothetical protein PRUPE_ppa013547mg [Prunus persica]
10 Hb_000094_230 0.1253495052 - - hypothetical protein JCGZ_04416 [Jatropha curcas]
11 Hb_000046_240 0.1264789461 - - PREDICTED: uncharacterized protein LOC105631837 [Jatropha curcas]
12 Hb_001025_100 0.1275278468 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic [Jatropha curcas]
13 Hb_000431_100 0.1277829998 - - ribonucleoside-diphosphate reductase small chain, putative [Ricinus communis]
14 Hb_027556_060 0.1289560878 - - hypothetical protein POPTR_0001s03520g [Populus trichocarpa]
15 Hb_000417_140 0.1295692538 - - PREDICTED: nucleobase-ascorbate transporter 2 [Jatropha curcas]
16 Hb_008725_100 0.1305725786 - - PREDICTED: histone H1-like [Jatropha curcas]
17 Hb_000098_270 0.1306148397 - - PREDICTED: 22.0 kDa class IV heat shock protein [Jatropha curcas]
18 Hb_000805_270 0.1324123354 - - PREDICTED: expansin-A4 [Gossypium raimondii]
19 Hb_004846_080 0.1367092082 - - DNA replication licensing factor MCM3, putative [Ricinus communis]
20 Hb_000024_150 0.1367112822 - - PREDICTED: subtilisin-like protease SBT2.5 [Jatropha curcas]

Gene co-expression network

sample Hb_001782_100 Hb_001782_100 Hb_006351_030 Hb_006351_030 Hb_001782_100--Hb_006351_030 Hb_000152_590 Hb_000152_590 Hb_001782_100--Hb_000152_590 Hb_007590_110 Hb_007590_110 Hb_001782_100--Hb_007590_110 Hb_024682_030 Hb_024682_030 Hb_001782_100--Hb_024682_030 Hb_010672_010 Hb_010672_010 Hb_001782_100--Hb_010672_010 Hb_000535_040 Hb_000535_040 Hb_001782_100--Hb_000535_040 Hb_001025_100 Hb_001025_100 Hb_006351_030--Hb_001025_100 Hb_000098_270 Hb_000098_270 Hb_006351_030--Hb_000098_270 Hb_006351_030--Hb_000152_590 Hb_000878_120 Hb_000878_120 Hb_006351_030--Hb_000878_120 Hb_006916_120 Hb_006916_120 Hb_006351_030--Hb_006916_120 Hb_000152_590--Hb_010672_010 Hb_133508_020 Hb_133508_020 Hb_000152_590--Hb_133508_020 Hb_000152_590--Hb_006916_120 Hb_146901_020 Hb_146901_020 Hb_000152_590--Hb_146901_020 Hb_000316_060 Hb_000316_060 Hb_007590_110--Hb_000316_060 Hb_007590_110--Hb_024682_030 Hb_129996_010 Hb_129996_010 Hb_007590_110--Hb_129996_010 Hb_007590_110--Hb_006351_030 Hb_000417_140 Hb_000417_140 Hb_007590_110--Hb_000417_140 Hb_003360_010 Hb_003360_010 Hb_024682_030--Hb_003360_010 Hb_000592_100 Hb_000592_100 Hb_024682_030--Hb_000592_100 Hb_000431_100 Hb_000431_100 Hb_024682_030--Hb_000431_100 Hb_001524_120 Hb_001524_120 Hb_024682_030--Hb_001524_120 Hb_000024_150 Hb_000024_150 Hb_024682_030--Hb_000024_150 Hb_010672_010--Hb_146901_020 Hb_010672_010--Hb_000592_100 Hb_010672_010--Hb_000098_270 Hb_020025_030 Hb_020025_030 Hb_010672_010--Hb_020025_030 Hb_000094_230 Hb_000094_230 Hb_000535_040--Hb_000094_230 Hb_000272_010 Hb_000272_010 Hb_000535_040--Hb_000272_010 Hb_008143_050 Hb_008143_050 Hb_000535_040--Hb_008143_050 Hb_001263_030 Hb_001263_030 Hb_000535_040--Hb_001263_030 Hb_000979_070 Hb_000979_070 Hb_000535_040--Hb_000979_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.11939 5.60719 42.2176 46.1621 0.572535 0.551326
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0198976 0.0156566 0.178653 18.7921 4.8129

CAGE analysis