Hb_001789_010

Information

Type -
Description -
Location Contig1789: 21921-25403
Sequence    

Annotation

kegg
ID pop:POPTR_0015s13020g
description POPTRDRAFT_575832; hypothetical protein
nr
ID XP_002321921.1
description hypothetical protein POPTR_0015s13020g [Populus trichocarpa]
swissprot
ID Q93Z79
description Cytochrome P450 714A1 OS=Arabidopsis thaliana GN=CYP714A1 PE=2 SV=1
trembl
ID B9ID94
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s13020g PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001789_010 0.0 - - hypothetical protein POPTR_0015s13020g [Populus trichocarpa]
2 Hb_111985_120 0.0608804501 - - dihydroflavonol-4-reductase [Vitis rotundifolia]
3 Hb_111693_010 0.1054770887 - - hypothetical protein JCGZ_21650 [Jatropha curcas]
4 Hb_001377_480 0.1069735082 transcription factor TF Family: MYB Myb domain protein 7, putative [Theobroma cacao]
5 Hb_000220_170 0.1128567303 - - -
6 Hb_187211_010 0.1153995786 - - PREDICTED: beta-glucosidase 17-like [Jatropha curcas]
7 Hb_002553_100 0.1192970666 transcription factor TF Family: ERF Ethylene-responsive transcription factor [Morus notabilis]
8 Hb_001101_020 0.1200718334 - - hypothetical protein RCOM_0615680 [Ricinus communis]
9 Hb_004055_080 0.1275291635 - - calmodulin binding protein, putative [Ricinus communis]
10 Hb_005653_100 0.1530324396 - - hypothetical protein POPTR_0004s19580g [Populus trichocarpa]
11 Hb_111985_160 0.1550487397 - - hypothetical protein B456_010G008900 [Gossypium raimondii]
12 Hb_002003_030 0.1595396124 - - PREDICTED: UDP-glycosyltransferase 74F1-like [Jatropha curcas]
13 Hb_000029_420 0.1610863945 - - PREDICTED: putative lipid-transfer protein DIR1 [Jatropha curcas]
14 Hb_142522_030 0.1696802875 - - hypothetical protein JCGZ_21596 [Jatropha curcas]
15 Hb_007645_110 0.1749821715 transcription factor TF Family: ERF hypothetical protein RCOM_0089590 [Ricinus communis]
16 Hb_116469_010 0.1771255043 - - PREDICTED: uncharacterized protein LOC105647834 [Jatropha curcas]
17 Hb_002081_220 0.1774330397 - - PREDICTED: uncharacterized protein LOC103707552 [Phoenix dactylifera]
18 Hb_001609_080 0.1797351201 - - hypothetical protein POPTR_0017s05660g [Populus trichocarpa]
19 Hb_000625_130 0.1838802989 - - PREDICTED: naringenin,2-oxoglutarate 3-dioxygenase [Jatropha curcas]
20 Hb_000086_720 0.1842256921 - - leucoanthocyanidin dioxygenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001789_010 Hb_001789_010 Hb_111985_120 Hb_111985_120 Hb_001789_010--Hb_111985_120 Hb_111693_010 Hb_111693_010 Hb_001789_010--Hb_111693_010 Hb_001377_480 Hb_001377_480 Hb_001789_010--Hb_001377_480 Hb_000220_170 Hb_000220_170 Hb_001789_010--Hb_000220_170 Hb_187211_010 Hb_187211_010 Hb_001789_010--Hb_187211_010 Hb_002553_100 Hb_002553_100 Hb_001789_010--Hb_002553_100 Hb_111985_120--Hb_001377_480 Hb_111985_120--Hb_111693_010 Hb_111985_120--Hb_000220_170 Hb_111985_160 Hb_111985_160 Hb_111985_120--Hb_111985_160 Hb_001101_020 Hb_001101_020 Hb_111985_120--Hb_001101_020 Hb_004055_080 Hb_004055_080 Hb_111693_010--Hb_004055_080 Hb_111693_010--Hb_000220_170 Hb_058526_010 Hb_058526_010 Hb_111693_010--Hb_058526_010 Hb_005653_100 Hb_005653_100 Hb_111693_010--Hb_005653_100 Hb_000029_420 Hb_000029_420 Hb_111693_010--Hb_000029_420 Hb_001377_480--Hb_187211_010 Hb_000625_130 Hb_000625_130 Hb_001377_480--Hb_000625_130 Hb_001377_480--Hb_001101_020 Hb_142522_030 Hb_142522_030 Hb_001377_480--Hb_142522_030 Hb_000220_170--Hb_004055_080 Hb_000220_170--Hb_002553_100 Hb_000220_170--Hb_058526_010 Hb_187211_010--Hb_001101_020 Hb_187211_010--Hb_111985_120 Hb_187211_010--Hb_000625_130 Hb_187211_010--Hb_142522_030 Hb_002553_100--Hb_111985_120 Hb_002553_100--Hb_111693_010 Hb_001006_200 Hb_001006_200 Hb_002553_100--Hb_001006_200 Hb_174514_010 Hb_174514_010 Hb_002553_100--Hb_174514_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0164295 0.0634443 0.0123764 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.118267 0

CAGE analysis