Hb_001789_030

Information

Type -
Description -
Location Contig1789: 60986-64685
Sequence    

Annotation

kegg
ID rcu:RCOM_1583410
description D-alanyl-D-alanine endopeptidase, putative
nr
ID XP_012090242.1
description PREDICTED: signal peptide peptidase-like 1 [Jatropha curcas]
swissprot
ID Q93Z32
description Signal peptide peptidase-like 1 OS=Arabidopsis thaliana GN=SPPL1 PE=2 SV=1
trembl
ID B9RIX2
description D-alanyl-D-alanine endopeptidase, putative OS=Ricinus communis GN=RCOM_1583410 PE=4 SV=1
Gene Ontology
ID GO:0005802
description signal peptide peptidase-like 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17188: 60977-62466 , PASA_asmbl_17189: 60997-61903 , PASA_asmbl_17190: 63038-63260
cDNA
(Sanger)
(ID:Location)		 013_A10.ab1: 60977-62466

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001789_030 0.0 - - PREDICTED: signal peptide peptidase-like 1 [Jatropha curcas]
2 Hb_000163_090 0.0656751738 - - gamma-tubulin complex component, putative [Ricinus communis]
3 Hb_000352_300 0.0695786502 - - PREDICTED: eukaryotic peptide chain release factor subunit 1-3 [Jatropha curcas]
4 Hb_000184_070 0.0718142354 - - PREDICTED: uncharacterized protein LOC105641537 isoform X1 [Jatropha curcas]
5 Hb_000637_150 0.0761053117 - - Protein CASP, putative [Ricinus communis]
6 Hb_001584_140 0.0773482219 - - PREDICTED: uncharacterized protein LOC105647409 [Jatropha curcas]
7 Hb_001009_320 0.0801110526 - - PREDICTED: uncharacterized protein LOC105640250 [Jatropha curcas]
8 Hb_007982_030 0.0834508228 - - PREDICTED: probable inactive receptor kinase At5g10020 isoform X1 [Jatropha curcas]
9 Hb_003683_020 0.0843668528 - - serine/threonine protein kinase, putative [Ricinus communis]
10 Hb_010294_010 0.0850934811 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B [Jatropha curcas]
11 Hb_000477_050 0.0853194925 - - PREDICTED: 26S protease regulatory subunit 8 homolog A [Jatropha curcas]
12 Hb_001518_080 0.086070099 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105646545 [Jatropha curcas]
13 Hb_008511_020 0.0867856755 - - PREDICTED: coatomer subunit gamma-2 [Jatropha curcas]
14 Hb_159809_030 0.0873332383 - - PREDICTED: UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase 2-like isoform X2 [Jatropha curcas]
15 Hb_001488_220 0.0876573265 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
16 Hb_007481_010 0.0884231358 - - PREDICTED: TBC1 domain family member 22B [Jatropha curcas]
17 Hb_002785_050 0.0893005999 - - PREDICTED: adenylosuccinate lyase-like [Jatropha curcas]
18 Hb_033286_010 0.0896447111 - - PREDICTED: probable beta-1,3-galactosyltransferase 14 [Jatropha curcas]
19 Hb_001269_330 0.0897009465 - - PREDICTED: uncharacterized protein LOC105645377 [Jatropha curcas]
20 Hb_001655_030 0.0903103304 transcription factor TF Family: SNF2 PREDICTED: SNF2 domain-containing protein CLASSY 3 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001789_030 Hb_001789_030 Hb_000163_090 Hb_000163_090 Hb_001789_030--Hb_000163_090 Hb_000352_300 Hb_000352_300 Hb_001789_030--Hb_000352_300 Hb_000184_070 Hb_000184_070 Hb_001789_030--Hb_000184_070 Hb_000637_150 Hb_000637_150 Hb_001789_030--Hb_000637_150 Hb_001584_140 Hb_001584_140 Hb_001789_030--Hb_001584_140 Hb_001009_320 Hb_001009_320 Hb_001789_030--Hb_001009_320 Hb_001518_080 Hb_001518_080 Hb_000163_090--Hb_001518_080 Hb_001377_310 Hb_001377_310 Hb_000163_090--Hb_001377_310 Hb_008511_020 Hb_008511_020 Hb_000163_090--Hb_008511_020 Hb_000163_090--Hb_000184_070 Hb_030982_010 Hb_030982_010 Hb_000163_090--Hb_030982_010 Hb_007481_010 Hb_007481_010 Hb_000352_300--Hb_007481_010 Hb_003528_030 Hb_003528_030 Hb_000352_300--Hb_003528_030 Hb_000352_300--Hb_000184_070 Hb_000477_100 Hb_000477_100 Hb_000352_300--Hb_000477_100 Hb_000046_500 Hb_000046_500 Hb_000352_300--Hb_000046_500 Hb_003683_020 Hb_003683_020 Hb_000352_300--Hb_003683_020 Hb_001703_050 Hb_001703_050 Hb_000184_070--Hb_001703_050 Hb_000371_090 Hb_000371_090 Hb_000184_070--Hb_000371_090 Hb_002675_030 Hb_002675_030 Hb_000184_070--Hb_002675_030 Hb_000637_150--Hb_001584_140 Hb_001205_250 Hb_001205_250 Hb_000637_150--Hb_001205_250 Hb_000637_150--Hb_001518_080 Hb_000008_290 Hb_000008_290 Hb_000637_150--Hb_000008_290 Hb_005488_020 Hb_005488_020 Hb_000637_150--Hb_005488_020 Hb_000136_110 Hb_000136_110 Hb_001584_140--Hb_000136_110 Hb_001584_140--Hb_001205_250 Hb_000441_220 Hb_000441_220 Hb_001584_140--Hb_000441_220 Hb_001205_120 Hb_001205_120 Hb_001584_140--Hb_001205_120 Hb_001584_140--Hb_001518_080 Hb_000006_010 Hb_000006_010 Hb_001009_320--Hb_000006_010 Hb_000477_050 Hb_000477_050 Hb_001009_320--Hb_000477_050 Hb_000522_170 Hb_000522_170 Hb_001009_320--Hb_000522_170 Hb_000120_280 Hb_000120_280 Hb_001009_320--Hb_000120_280 Hb_015807_050 Hb_015807_050 Hb_001009_320--Hb_015807_050 Hb_000313_220 Hb_000313_220 Hb_001009_320--Hb_000313_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.8103 13.0514 20.1138 32.0504 22.3265 20.056
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.7094 11.4628 16.0241 23.9033 19.4968

CAGE analysis