Hb_001789_050

Information

Type -
Description -
Location Contig1789: 71326-73181
Sequence    

Annotation

kegg
ID bvg:104888537
description 60S ribosomal protein L36-2-like
nr
ID XP_010108352.1
description 60S ribosomal protein L36-2 [Morus notabilis]
swissprot
ID Q9M352
description 60S ribosomal protein L36-2 OS=Arabidopsis thaliana GN=RPL36B PE=2 SV=1
trembl
ID W9SA20
description 60S ribosomal protein L36 OS=Morus notabilis GN=L484_006508 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l36-2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17195: 71183-73188 , PASA_asmbl_17196: 72840-73134
cDNA
(Sanger)
(ID:Location)		 005_N23.ab1: 71512-73190 , 007_J13.ab1: 71514-73191 , 020_C11.ab1: 71468-73188 , 024_B02.ab1: 71516-73188 , 026_K16.ab1: 71519-73190 , 028_L24.ab1: 71516-73188 , 034_N21.ab1: 71543-73188

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001789_050 0.0 - - 60S ribosomal protein L36-2 [Morus notabilis]
2 Hb_007120_090 0.0638720996 - - PREDICTED: 60S ribosomal protein L35 [Jatropha curcas]
3 Hb_000576_060 0.0746838045 - - truncated hemoglobin [Populus tremula x Populus tremuloides]
4 Hb_000997_120 0.0874955806 - - 40S ribosomal protein S15E [Hevea brasiliensis]
5 Hb_007245_080 0.0881528758 - - PREDICTED: uncharacterized protein LOC105644587 [Jatropha curcas]
6 Hb_000212_210 0.0914095894 - - unnamed protein product [Coffea canephora]
7 Hb_000676_160 0.0945738612 - - folate carrier protein, putative [Ricinus communis]
8 Hb_000735_040 0.096520436 - - 60S ribosomal protein L32A [Hevea brasiliensis]
9 Hb_002811_090 0.0971668537 - - 40S ribosomal protein S24A [Hevea brasiliensis]
10 Hb_009476_020 0.0973197672 - - tryptophan biosynthesis protein, putative [Ricinus communis]
11 Hb_000948_220 0.1030444957 - - hypothetical protein CICLE_v10013189mg [Citrus clementina]
12 Hb_008921_020 0.1043336847 - - PREDICTED: non-structural maintenance of chromosomes element 1 homolog [Jatropha curcas]
13 Hb_174865_010 0.1047067072 - - transcription initiation factor iia (tfiia), gamma chain, putative [Ricinus communis]
14 Hb_000506_070 0.1062929183 - - PREDICTED: 60S ribosomal protein L35 [Jatropha curcas]
15 Hb_000062_650 0.1065425522 - - PREDICTED: uncharacterized protein LOC105628245 [Jatropha curcas]
16 Hb_172221_010 0.1084246383 - - PREDICTED: 60S ribosomal protein L37-1 [Jatropha curcas]
17 Hb_002838_030 0.1087379805 - - 40S ribosomal protein S25A [Hevea brasiliensis]
18 Hb_002235_080 0.1088952012 - - PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP3 [Vitis vinifera]
19 Hb_000042_260 0.1091473554 - - PREDICTED: uncharacterized protein LOC105632814 [Jatropha curcas]
20 Hb_000329_020 0.1093973549 - - cytoplasmic ribosomal protein S13 [Panax ginseng]

Gene co-expression network

sample Hb_001789_050 Hb_001789_050 Hb_007120_090 Hb_007120_090 Hb_001789_050--Hb_007120_090 Hb_000576_060 Hb_000576_060 Hb_001789_050--Hb_000576_060 Hb_000997_120 Hb_000997_120 Hb_001789_050--Hb_000997_120 Hb_007245_080 Hb_007245_080 Hb_001789_050--Hb_007245_080 Hb_000212_210 Hb_000212_210 Hb_001789_050--Hb_000212_210 Hb_000676_160 Hb_000676_160 Hb_001789_050--Hb_000676_160 Hb_007120_090--Hb_000997_120 Hb_002838_030 Hb_002838_030 Hb_007120_090--Hb_002838_030 Hb_000948_220 Hb_000948_220 Hb_007120_090--Hb_000948_220 Hb_007120_090--Hb_000676_160 Hb_012395_130 Hb_012395_130 Hb_007120_090--Hb_012395_130 Hb_008921_020 Hb_008921_020 Hb_000576_060--Hb_008921_020 Hb_000735_040 Hb_000735_040 Hb_000576_060--Hb_000735_040 Hb_000062_650 Hb_000062_650 Hb_000576_060--Hb_000062_650 Hb_000788_010 Hb_000788_010 Hb_000576_060--Hb_000788_010 Hb_001141_140 Hb_001141_140 Hb_000576_060--Hb_001141_140 Hb_000997_120--Hb_002838_030 Hb_000997_120--Hb_012395_130 Hb_004543_040 Hb_004543_040 Hb_000997_120--Hb_004543_040 Hb_004125_110 Hb_004125_110 Hb_000997_120--Hb_004125_110 Hb_027684_020 Hb_027684_020 Hb_000997_120--Hb_027684_020 Hb_009476_020 Hb_009476_020 Hb_007245_080--Hb_009476_020 Hb_002235_080 Hb_002235_080 Hb_007245_080--Hb_002235_080 Hb_007245_080--Hb_000576_060 Hb_007245_080--Hb_000735_040 Hb_007245_080--Hb_007120_090 Hb_002811_090 Hb_002811_090 Hb_000212_210--Hb_002811_090 Hb_003057_020 Hb_003057_020 Hb_000212_210--Hb_003057_020 Hb_000212_210--Hb_007120_090 Hb_000042_260 Hb_000042_260 Hb_000212_210--Hb_000042_260 Hb_000272_050 Hb_000272_050 Hb_000212_210--Hb_000272_050 Hb_174865_010 Hb_174865_010 Hb_000676_160--Hb_174865_010 Hb_000676_160--Hb_000735_040 Hb_002798_020 Hb_002798_020 Hb_000676_160--Hb_002798_020 Hb_007065_010 Hb_007065_010 Hb_000676_160--Hb_007065_010 Hb_086639_090 Hb_086639_090 Hb_000676_160--Hb_086639_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
100.813 48.306 116.875 169.318 96.7002 99.579
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
245.023 691.306 105.402 183.142 63.8756

CAGE analysis