Hb_001789_070

Information

Type -
Description -
Location Contig1789: 98509-100895
Sequence    

Annotation

kegg
ID rcu:RCOM_1583270
description prolyl 4-hydroxylase alpha subunit, putative (EC:1.14.11.2)
nr
ID XP_012090235.1
description PREDICTED: probable prolyl 4-hydroxylase 12 [Jatropha curcas]
swissprot
ID Q8GXT7
description Probable prolyl 4-hydroxylase 12 OS=Arabidopsis thaliana GN=P4H12 PE=2 SV=1
trembl
ID A0A067JQK0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26091 PE=4 SV=1
Gene Ontology
ID GO:0004656
description probable prolyl 4-hydroxylase 12 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17201: 98373-98722 , PASA_asmbl_17202: 99502-99839 , PASA_asmbl_17203: 99859-100849
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001789_070 0.0 - - PREDICTED: probable prolyl 4-hydroxylase 12 [Jatropha curcas]
2 Hb_000529_190 0.061147726 - - PREDICTED: magnesium-dependent phosphatase 1-like [Jatropha curcas]
3 Hb_012799_160 0.0642338916 - - PREDICTED: ADP-ribosylation factor-related protein 1-like [Jatropha curcas]
4 Hb_025240_040 0.0699673697 - - hypothetical protein JCGZ_02438 [Jatropha curcas]
5 Hb_000103_090 0.0764405341 - - PREDICTED: protein RDM1 [Jatropha curcas]
6 Hb_003125_010 0.0778455951 - - PREDICTED: uncharacterized protein LOC105640205 [Jatropha curcas]
7 Hb_002214_040 0.0783853985 - - PREDICTED: tryptophan--tRNA ligase, cytoplasmic [Jatropha curcas]
8 Hb_001369_690 0.0811594674 - - PREDICTED: hypersensitive-induced response protein 4 [Jatropha curcas]
9 Hb_024714_100 0.0818262679 - - PREDICTED: alkylated DNA repair protein alkB homolog 8 isoform X1 [Jatropha curcas]
10 Hb_024185_020 0.0824244243 - - -
11 Hb_002477_070 0.0824418921 - - Charged multivesicular body protein 2a, putative [Ricinus communis]
12 Hb_015807_040 0.0834262638 - - PREDICTED: polycomb group protein FERTILIZATION-INDEPENDENT ENDOSPERM [Jatropha curcas]
13 Hb_002759_060 0.0839946118 - - PREDICTED: protein LSM12 homolog A-like [Jatropha curcas]
14 Hb_015934_070 0.0847191871 - - PREDICTED: ribose-phosphate pyrophosphokinase 4 isoform X1 [Jatropha curcas]
15 Hb_001833_110 0.0868675908 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003633_030 0.0869180203 - - f-actin capping protein alpha, putative [Ricinus communis]
17 Hb_009838_080 0.0876363372 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
18 Hb_000329_030 0.0882388052 - - PREDICTED: uncharacterized protein LOC105643133 isoform X1 [Jatropha curcas]
19 Hb_002616_050 0.0889563927 - - PREDICTED: traB domain-containing protein [Jatropha curcas]
20 Hb_007441_120 0.0894677807 - - PREDICTED: dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001789_070 Hb_001789_070 Hb_000529_190 Hb_000529_190 Hb_001789_070--Hb_000529_190 Hb_012799_160 Hb_012799_160 Hb_001789_070--Hb_012799_160 Hb_025240_040 Hb_025240_040 Hb_001789_070--Hb_025240_040 Hb_000103_090 Hb_000103_090 Hb_001789_070--Hb_000103_090 Hb_003125_010 Hb_003125_010 Hb_001789_070--Hb_003125_010 Hb_002214_040 Hb_002214_040 Hb_001789_070--Hb_002214_040 Hb_000529_190--Hb_002214_040 Hb_063716_050 Hb_063716_050 Hb_000529_190--Hb_063716_050 Hb_000103_560 Hb_000103_560 Hb_000529_190--Hb_000103_560 Hb_001604_080 Hb_001604_080 Hb_000529_190--Hb_001604_080 Hb_000832_140 Hb_000832_140 Hb_000529_190--Hb_000832_140 Hb_012799_160--Hb_003125_010 Hb_002207_110 Hb_002207_110 Hb_012799_160--Hb_002207_110 Hb_012799_160--Hb_000529_190 Hb_000479_190 Hb_000479_190 Hb_012799_160--Hb_000479_190 Hb_012799_160--Hb_025240_040 Hb_004218_110 Hb_004218_110 Hb_025240_040--Hb_004218_110 Hb_004254_120 Hb_004254_120 Hb_025240_040--Hb_004254_120 Hb_015934_070 Hb_015934_070 Hb_025240_040--Hb_015934_070 Hb_127552_030 Hb_127552_030 Hb_025240_040--Hb_127552_030 Hb_002759_060 Hb_002759_060 Hb_025240_040--Hb_002759_060 Hb_000421_220 Hb_000421_220 Hb_025240_040--Hb_000421_220 Hb_002890_140 Hb_002890_140 Hb_000103_090--Hb_002890_140 Hb_033834_040 Hb_033834_040 Hb_000103_090--Hb_033834_040 Hb_032717_080 Hb_032717_080 Hb_000103_090--Hb_032717_080 Hb_004128_190 Hb_004128_190 Hb_000103_090--Hb_004128_190 Hb_002477_330 Hb_002477_330 Hb_000103_090--Hb_002477_330 Hb_000103_090--Hb_000529_190 Hb_001369_690 Hb_001369_690 Hb_003125_010--Hb_001369_690 Hb_010504_020 Hb_010504_020 Hb_003125_010--Hb_010504_020 Hb_002473_130 Hb_002473_130 Hb_003125_010--Hb_002473_130 Hb_172426_040 Hb_172426_040 Hb_003125_010--Hb_172426_040 Hb_003125_010--Hb_025240_040 Hb_002214_040--Hb_000832_140 Hb_118707_030 Hb_118707_030 Hb_002214_040--Hb_118707_030 Hb_002477_070 Hb_002477_070 Hb_002214_040--Hb_002477_070 Hb_009838_080 Hb_009838_080 Hb_002214_040--Hb_009838_080 Hb_000815_040 Hb_000815_040 Hb_002214_040--Hb_000815_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.87958 1.45222 3.71588 4.9886 6.0485 9.79459
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.0864 8.97844 8.11442 5.47027 4.47123

CAGE analysis