Hb_001789_090

Information

Type transcription factor
Description TF Family: C2H2
Location Contig1789: 104806-115934
Sequence    

Annotation

kegg
ID rcu:RCOM_1583130
description hypothetical protein
nr
ID XP_012090229.1
description PREDICTED: uncharacterized protein LOC105648450 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JEM2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26088 PE=4 SV=1
Gene Ontology
ID GO:0046872
description c2h2-like zinc finger

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17208: 104973-106659 , PASA_asmbl_17209: 106827-109805 , PASA_asmbl_17211: 110592-110745 , PASA_asmbl_17212: 110756-111061
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001789_090 0.0 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105648450 [Jatropha curcas]
2 Hb_000802_080 0.0557280665 - - PREDICTED: F-box protein At5g46170-like [Jatropha curcas]
3 Hb_000062_240 0.0589231645 - - PREDICTED: signal recognition particle subunit SRP72 [Jatropha curcas]
4 Hb_015306_020 0.0625073115 transcription factor TF Family: MYB-related PREDICTED: dnaJ homolog subfamily C member 2 [Jatropha curcas]
5 Hb_000291_110 0.0634817563 - - eukaryotic translation initiation factor [Hevea brasiliensis]
6 Hb_002811_360 0.0735433391 - - PREDICTED: GDP-mannose 3,5-epimerase 2 [Eucalyptus grandis]
7 Hb_000406_220 0.0738676708 - - hypothetical protein POPTR_0005s04700g [Populus trichocarpa]
8 Hb_004837_040 0.0743349283 - - PREDICTED: nucleolar GTP-binding protein 1-like [Prunus mume]
9 Hb_001663_030 0.0764027079 - - PREDICTED: peroxisomal membrane protein 13 [Jatropha curcas]
10 Hb_181235_010 0.0792991336 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105645554 isoform X2 [Jatropha curcas]
11 Hb_002016_110 0.0802605464 - - transducin family protein [Populus trichocarpa]
12 Hb_028872_140 0.0810772414 - - PREDICTED: uncharacterized protein LOC105644767 isoform X1 [Jatropha curcas]
13 Hb_002026_180 0.0828768957 - - PREDICTED: uncharacterized protein LOC105645805 [Jatropha curcas]
14 Hb_000418_100 0.0842828482 - - PREDICTED: F-box protein SKIP19-like [Gossypium raimondii]
15 Hb_002154_030 0.0846372214 - - RNA binding protein, putative [Ricinus communis]
16 Hb_000032_290 0.085010146 transcription factor TF Family: RWP-RK PREDICTED: protein NLP7-like [Jatropha curcas]
17 Hb_007163_090 0.0854855966 - - PREDICTED: protein spt2-like [Jatropha curcas]
18 Hb_000577_010 0.0884468131 - - hypothetical protein JCGZ_23887 [Jatropha curcas]
19 Hb_000207_250 0.0887525427 - - Non-imprinted in Prader-Willi/Angelman syndrome region protein, putative [Ricinus communis]
20 Hb_000700_110 0.0893448848 - - Vesicle-associated membrane protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001789_090 Hb_001789_090 Hb_000802_080 Hb_000802_080 Hb_001789_090--Hb_000802_080 Hb_000062_240 Hb_000062_240 Hb_001789_090--Hb_000062_240 Hb_015306_020 Hb_015306_020 Hb_001789_090--Hb_015306_020 Hb_000291_110 Hb_000291_110 Hb_001789_090--Hb_000291_110 Hb_002811_360 Hb_002811_360 Hb_001789_090--Hb_002811_360 Hb_000406_220 Hb_000406_220 Hb_001789_090--Hb_000406_220 Hb_000802_080--Hb_002811_360 Hb_001366_190 Hb_001366_190 Hb_000802_080--Hb_001366_190 Hb_001663_030 Hb_001663_030 Hb_000802_080--Hb_001663_030 Hb_001301_200 Hb_001301_200 Hb_000802_080--Hb_001301_200 Hb_023344_030 Hb_023344_030 Hb_000802_080--Hb_023344_030 Hb_004837_040 Hb_004837_040 Hb_000062_240--Hb_004837_040 Hb_000062_240--Hb_002811_360 Hb_000062_240--Hb_000291_110 Hb_000418_100 Hb_000418_100 Hb_000062_240--Hb_000418_100 Hb_000062_240--Hb_015306_020 Hb_001454_210 Hb_001454_210 Hb_015306_020--Hb_001454_210 Hb_002890_340 Hb_002890_340 Hb_015306_020--Hb_002890_340 Hb_028872_140 Hb_028872_140 Hb_015306_020--Hb_028872_140 Hb_009111_050 Hb_009111_050 Hb_015306_020--Hb_009111_050 Hb_004046_010 Hb_004046_010 Hb_015306_020--Hb_004046_010 Hb_181235_010 Hb_181235_010 Hb_000291_110--Hb_181235_010 Hb_000291_110--Hb_004837_040 Hb_003750_080 Hb_003750_080 Hb_000291_110--Hb_003750_080 Hb_000061_420 Hb_000061_420 Hb_000291_110--Hb_000061_420 Hb_004724_200 Hb_004724_200 Hb_002811_360--Hb_004724_200 Hb_039837_010 Hb_039837_010 Hb_002811_360--Hb_039837_010 Hb_002811_360--Hb_028872_140 Hb_002811_360--Hb_001454_210 Hb_002811_360--Hb_001301_200 Hb_000554_020 Hb_000554_020 Hb_000406_220--Hb_000554_020 Hb_000032_290 Hb_000032_290 Hb_000406_220--Hb_000032_290 Hb_000406_220--Hb_181235_010 Hb_011161_010 Hb_011161_010 Hb_000406_220--Hb_011161_010 Hb_002810_020 Hb_002810_020 Hb_000406_220--Hb_002810_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.29414 4.862 1.19433 3.87897 6.56342 10.1896
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.3224 6.59993 9.90201 5.58408 2.28691

CAGE analysis