Hb_001789_110

Information

Type -
Description -
Location Contig1789: 122108-127545
Sequence    

Annotation

kegg
ID rcu:RCOM_1583110
description ubiquitin-protein ligase, putative
nr
ID XP_002513681.1
description ubiquitin-protein ligase, putative [Ricinus communis]
swissprot
ID Q8LF97
description SKP1-like protein 21 OS=Arabidopsis thaliana GN=ASK21 PE=2 SV=1
trembl
ID B9RIW2
description Ubiquitin-protein ligase, putative OS=Ricinus communis GN=RCOM_1583110 PE=4 SV=1
Gene Ontology
ID GO:0016874
description skp1-like protein 21 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17214: 122481-123777 , PASA_asmbl_17215: 124687-127484
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001789_110 0.0 - - ubiquitin-protein ligase, putative [Ricinus communis]
2 Hb_027073_020 0.0521859531 - - PREDICTED: testis-expressed sequence 10 protein isoform X2 [Jatropha curcas]
3 Hb_003517_040 0.0573454536 - - PREDICTED: putative DUF21 domain-containing protein At3g13070, chloroplastic [Jatropha curcas]
4 Hb_007413_010 0.0575443053 - - PREDICTED: SUMO-activating enzyme subunit 2 [Jatropha curcas]
5 Hb_122968_010 0.0600580067 - - hypothetical protein JCGZ_23576 [Jatropha curcas]
6 Hb_188281_040 0.0609719363 - - PREDICTED: transcription initiation factor TFIID subunit 12 [Jatropha curcas]
7 Hb_006913_020 0.0620687042 - - PREDICTED: uncharacterized protein LOC105649145 isoform X1 [Jatropha curcas]
8 Hb_000720_050 0.0627569997 - - PREDICTED: uncharacterized protein LOC105645857 isoform X1 [Jatropha curcas]
9 Hb_001377_190 0.0647629057 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATX3 isoform X2 [Jatropha curcas]
10 Hb_003117_030 0.067253523 - - PREDICTED: protein RCC2 homolog [Jatropha curcas]
11 Hb_000482_190 0.0681515888 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
12 Hb_000441_090 0.0683211924 - - PREDICTED: serine/threonine-protein phosphatase 6 regulatory subunit 2 [Jatropha curcas]
13 Hb_003040_050 0.0684601946 - - PREDICTED: uncharacterized protein LOC105638219 [Jatropha curcas]
14 Hb_001712_060 0.0686598519 - - PREDICTED: proline-rich receptor-like protein kinase PERK9 [Jatropha curcas]
15 Hb_012239_070 0.0694207619 - - PREDICTED: uncharacterized protein LOC105634113 [Jatropha curcas]
16 Hb_000347_430 0.0697673436 - - PREDICTED: mitochondrial ubiquitin ligase activator of nfkb 1-A [Jatropha curcas]
17 Hb_073171_070 0.0697986131 - - PREDICTED: RNA polymerase II-associated factor 1 homolog [Jatropha curcas]
18 Hb_000406_200 0.0701181119 - - PREDICTED: translation initiation factor eIF-2B subunit epsilon-like isoform X4 [Jatropha curcas]
19 Hb_000212_230 0.0715668155 - - PREDICTED: endoribonuclease Dicer homolog 2 [Jatropha curcas]
20 Hb_008948_020 0.0717096957 - - hypothetical protein JCGZ_21216 [Jatropha curcas]

Gene co-expression network

sample Hb_001789_110 Hb_001789_110 Hb_027073_020 Hb_027073_020 Hb_001789_110--Hb_027073_020 Hb_003517_040 Hb_003517_040 Hb_001789_110--Hb_003517_040 Hb_007413_010 Hb_007413_010 Hb_001789_110--Hb_007413_010 Hb_122968_010 Hb_122968_010 Hb_001789_110--Hb_122968_010 Hb_188281_040 Hb_188281_040 Hb_001789_110--Hb_188281_040 Hb_006913_020 Hb_006913_020 Hb_001789_110--Hb_006913_020 Hb_001999_310 Hb_001999_310 Hb_027073_020--Hb_001999_310 Hb_000789_200 Hb_000789_200 Hb_027073_020--Hb_000789_200 Hb_029243_030 Hb_029243_030 Hb_027073_020--Hb_029243_030 Hb_027073_020--Hb_122968_010 Hb_000406_200 Hb_000406_200 Hb_027073_020--Hb_000406_200 Hb_000976_140 Hb_000976_140 Hb_003517_040--Hb_000976_140 Hb_000138_100 Hb_000138_100 Hb_003517_040--Hb_000138_100 Hb_003734_010 Hb_003734_010 Hb_003517_040--Hb_003734_010 Hb_000441_090 Hb_000441_090 Hb_003517_040--Hb_000441_090 Hb_002263_020 Hb_002263_020 Hb_003517_040--Hb_002263_020 Hb_007413_010--Hb_006913_020 Hb_003117_030 Hb_003117_030 Hb_007413_010--Hb_003117_030 Hb_008948_020 Hb_008948_020 Hb_007413_010--Hb_008948_020 Hb_001377_190 Hb_001377_190 Hb_007413_010--Hb_001377_190 Hb_001925_060 Hb_001925_060 Hb_007413_010--Hb_001925_060 Hb_000656_070 Hb_000656_070 Hb_122968_010--Hb_000656_070 Hb_122968_010--Hb_003117_030 Hb_122968_010--Hb_000406_200 Hb_002897_090 Hb_002897_090 Hb_122968_010--Hb_002897_090 Hb_188281_040--Hb_000406_200 Hb_188281_040--Hb_003117_030 Hb_005489_040 Hb_005489_040 Hb_188281_040--Hb_005489_040 Hb_000409_050 Hb_000409_050 Hb_188281_040--Hb_000409_050 Hb_000363_310 Hb_000363_310 Hb_188281_040--Hb_000363_310 Hb_021374_030 Hb_021374_030 Hb_006913_020--Hb_021374_030 Hb_006913_020--Hb_008948_020 Hb_006913_020--Hb_001377_190 Hb_003098_070 Hb_003098_070 Hb_006913_020--Hb_003098_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.08883 4.11824 3.93673 4.89501 3.08266 3.68135
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.35929 4.10769 2.9682 4.83472 7.2819

CAGE analysis