Hb_001789_150

Information

Type -
Description -
Location Contig1789: 157672-163702
Sequence    

Annotation

kegg
ID pop:POPTR_0015s12870g
description POPTRDRAFT_902625; hypothetical protein
nr
ID XP_012090220.1
description PREDICTED: mitogen-activated protein kinase kinase kinase YODA-like isoform X1 [Jatropha curcas]
swissprot
ID Q9CAD5
description Mitogen-activated protein kinase kinase kinase YODA OS=Arabidopsis thaliana GN=YDA PE=1 SV=1
trembl
ID A0A067JHK3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26084 PE=4 SV=1
Gene Ontology
ID GO:0005622
description mitogen-activated protein kinase kinase kinase yoda-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17220: 156912-163608 , PASA_asmbl_17221: 161055-163608
cDNA
(Sanger)
(ID:Location)		 007_L04.ab1: 161971-163608

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001789_150 0.0 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA-like isoform X1 [Jatropha curcas]
2 Hb_000012_310 0.0627775639 - - PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X2 [Jatropha curcas]
3 Hb_000574_450 0.063270291 - - PREDICTED: signal recognition particle 54 kDa protein 2 [Jatropha curcas]
4 Hb_010515_020 0.0667345305 - - PREDICTED: protein transport protein SEC23-like [Jatropha curcas]
5 Hb_000497_300 0.0711361917 - - peroxisomal membrane protein [Hevea brasiliensis]
6 Hb_001352_020 0.0715126675 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 8, mitochondrial-like [Jatropha curcas]
7 Hb_004480_100 0.0732231653 - - PREDICTED: calcium homeostasis endoplasmic reticulum protein [Jatropha curcas]
8 Hb_001818_100 0.0735084357 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
9 Hb_007416_090 0.0739877986 - - UDP-sugar transporter, putative [Ricinus communis]
10 Hb_001876_010 0.0748130394 - - PREDICTED: arginyl-tRNA--protein transferase 2-like isoform X1 [Jatropha curcas]
11 Hb_005582_040 0.0755655671 - - PREDICTED: regulator of nonsense transcripts 1 homolog [Jatropha curcas]
12 Hb_001898_080 0.076512197 - - PREDICTED: MACPF domain-containing protein At4g24290 isoform X2 [Jatropha curcas]
13 Hb_006452_120 0.0765627507 - - PREDICTED: protein FAM188A [Jatropha curcas]
14 Hb_000487_270 0.0766489039 - - hypothetical protein JCGZ_22651 [Jatropha curcas]
15 Hb_000069_210 0.0768803001 - - PREDICTED: exportin-2 [Jatropha curcas]
16 Hb_000504_180 0.0779270858 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
17 Hb_029243_030 0.0790912474 - - PREDICTED: regulatory-associated protein of TOR 1 isoform X1 [Jatropha curcas]
18 Hb_001163_100 0.0792174723 - - serine/threonine protein kinase, putative [Ricinus communis]
19 Hb_000984_170 0.0798265547 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
20 Hb_004030_080 0.0839079291 - - hypothetical protein JCGZ_25110 [Jatropha curcas]

Gene co-expression network

sample Hb_001789_150 Hb_001789_150 Hb_000012_310 Hb_000012_310 Hb_001789_150--Hb_000012_310 Hb_000574_450 Hb_000574_450 Hb_001789_150--Hb_000574_450 Hb_010515_020 Hb_010515_020 Hb_001789_150--Hb_010515_020 Hb_000497_300 Hb_000497_300 Hb_001789_150--Hb_000497_300 Hb_001352_020 Hb_001352_020 Hb_001789_150--Hb_001352_020 Hb_004480_100 Hb_004480_100 Hb_001789_150--Hb_004480_100 Hb_008748_030 Hb_008748_030 Hb_000012_310--Hb_008748_030 Hb_006452_120 Hb_006452_120 Hb_000012_310--Hb_006452_120 Hb_006059_010 Hb_006059_010 Hb_000012_310--Hb_006059_010 Hb_000012_310--Hb_000574_450 Hb_002660_170 Hb_002660_170 Hb_000012_310--Hb_002660_170 Hb_029243_030 Hb_029243_030 Hb_000574_450--Hb_029243_030 Hb_149985_010 Hb_149985_010 Hb_000574_450--Hb_149985_010 Hb_000487_270 Hb_000487_270 Hb_000574_450--Hb_000487_270 Hb_000574_450--Hb_010515_020 Hb_000574_450--Hb_006452_120 Hb_001500_140 Hb_001500_140 Hb_000574_450--Hb_001500_140 Hb_010515_020--Hb_006452_120 Hb_002989_020 Hb_002989_020 Hb_010515_020--Hb_002989_020 Hb_011063_050 Hb_011063_050 Hb_010515_020--Hb_011063_050 Hb_010515_020--Hb_029243_030 Hb_002830_010 Hb_002830_010 Hb_010515_020--Hb_002830_010 Hb_010344_050 Hb_010344_050 Hb_000497_300--Hb_010344_050 Hb_004712_130 Hb_004712_130 Hb_000497_300--Hb_004712_130 Hb_000497_300--Hb_001352_020 Hb_000116_260 Hb_000116_260 Hb_000497_300--Hb_000116_260 Hb_164010_030 Hb_164010_030 Hb_000497_300--Hb_164010_030 Hb_001352_020--Hb_000116_260 Hb_000406_130 Hb_000406_130 Hb_001352_020--Hb_000406_130 Hb_000471_110 Hb_000471_110 Hb_001352_020--Hb_000471_110 Hb_001352_020--Hb_010344_050 Hb_002768_060 Hb_002768_060 Hb_004480_100--Hb_002768_060 Hb_000789_200 Hb_000789_200 Hb_004480_100--Hb_000789_200 Hb_002908_050 Hb_002908_050 Hb_004480_100--Hb_002908_050 Hb_001876_010 Hb_001876_010 Hb_004480_100--Hb_001876_010 Hb_001951_220 Hb_001951_220 Hb_004480_100--Hb_001951_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.31331 7.13574 4.00081 11.0187 4.36299 6.21623
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.63517 6.88158 9.64836 8.80017 10.2081

CAGE analysis