Hb_001789_170

Information

Type -
Description -
Location Contig1789: 169761-170324
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa016210mg
description hypothetical protein
nr
ID KDP37578.1
description hypothetical protein JCGZ_08269 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KRD9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08269 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001789_170 0.0 - - hypothetical protein JCGZ_08269 [Jatropha curcas]
2 Hb_002498_130 0.0344146554 - - hypothetical protein POPTR_0004s00980g [Populus trichocarpa]
3 Hb_000781_050 0.0413313737 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
4 Hb_000392_290 0.0435562335 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
5 Hb_011356_020 0.060137825 - - -
6 Hb_139691_010 0.0930070364 - - -
7 Hb_008035_050 0.1028313741 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
8 Hb_003659_020 0.1078921948 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
9 Hb_024247_020 0.1293292255 - - PREDICTED: uncharacterized protein LOC105634579 [Jatropha curcas]
10 Hb_000264_220 0.2099350733 - - PREDICTED: uncharacterized protein LOC105649527 [Jatropha curcas]
11 Hb_000856_160 0.2568898384 - - -
12 Hb_001143_260 0.2779651487 - - PREDICTED: metal transporter Nramp5-like [Populus euphratica]
13 Hb_001342_050 0.2819831314 - - -
14 Hb_152362_010 0.2998509375 - - Gamma-glutamyl-gamma-aminobutyrate hydrolase, putative [Ricinus communis]
15 Hb_000011_090 0.3131870707 - - PREDICTED: uncharacterized protein OsI_027940-like [Jatropha curcas]
16 Hb_000184_200 0.313679649 - - -
17 Hb_000226_100 0.3224142241 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
18 Hb_043623_020 0.3306025526 - - hypothetical protein JCGZ_17692 [Jatropha curcas]
19 Hb_002513_050 0.3330004502 - - hypothetical protein F383_14794 [Gossypium arboreum]
20 Hb_000038_190 0.3425373194 - - -

Gene co-expression network

sample Hb_001789_170 Hb_001789_170 Hb_002498_130 Hb_002498_130 Hb_001789_170--Hb_002498_130 Hb_000781_050 Hb_000781_050 Hb_001789_170--Hb_000781_050 Hb_000392_290 Hb_000392_290 Hb_001789_170--Hb_000392_290 Hb_011356_020 Hb_011356_020 Hb_001789_170--Hb_011356_020 Hb_139691_010 Hb_139691_010 Hb_001789_170--Hb_139691_010 Hb_008035_050 Hb_008035_050 Hb_001789_170--Hb_008035_050 Hb_002498_130--Hb_000781_050 Hb_002498_130--Hb_011356_020 Hb_002498_130--Hb_000392_290 Hb_024247_020 Hb_024247_020 Hb_002498_130--Hb_024247_020 Hb_002498_130--Hb_139691_010 Hb_000781_050--Hb_011356_020 Hb_000781_050--Hb_000392_290 Hb_000781_050--Hb_024247_020 Hb_000781_050--Hb_139691_010 Hb_000392_290--Hb_139691_010 Hb_000392_290--Hb_008035_050 Hb_003659_020 Hb_003659_020 Hb_000392_290--Hb_003659_020 Hb_011356_020--Hb_024247_020 Hb_011356_020--Hb_000392_290 Hb_011356_020--Hb_139691_010 Hb_139691_010--Hb_008035_050 Hb_139691_010--Hb_003659_020 Hb_008035_050--Hb_003659_020 Hb_008035_050--Hb_002498_130 Hb_008035_050--Hb_000781_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0809967 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.294351 0 0

CAGE analysis