Hb_001789_210

Information

Type -
Description -
Location Contig1789: 199455-206294
Sequence    

Annotation

kegg
ID rcu:RCOM_1583020
description hypothetical protein
nr
ID XP_012078518.1
description PREDICTED: methyltransferase-like protein 1 isoform X2 [Jatropha curcas]
swissprot
ID Q94AI4
description Methyltransferase-like protein 1 OS=Arabidopsis thaliana GN=EMB1691 PE=2 SV=1
trembl
ID A0A067K947
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13192 PE=4 SV=1
Gene Ontology
ID GO:0005829
description methyltransferase-like protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17233: 199792-199892 , PASA_asmbl_17234: 200136-204130
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001789_210 0.0 - - PREDICTED: methyltransferase-like protein 1 isoform X2 [Jatropha curcas]
2 Hb_007364_010 0.0797657804 - - PREDICTED: general transcription factor 3C polypeptide 3-like isoform X1 [Jatropha curcas]
3 Hb_002798_040 0.0862160714 transcription factor TF Family: MYB cell division control protein, putative [Ricinus communis]
4 Hb_001638_250 0.0881858544 - - PREDICTED: pentatricopeptide repeat-containing protein At1g05600 [Jatropha curcas]
5 Hb_004934_090 0.0901380824 - - hypothetical protein JCGZ_08073 [Jatropha curcas]
6 Hb_001736_040 0.0908706514 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
7 Hb_006649_060 0.0925988607 - - conserved hypothetical protein [Ricinus communis]
8 Hb_007586_030 0.0929461467 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15690-like isoform X1 [Jatropha curcas]
9 Hb_001516_100 0.0983330994 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
10 Hb_000977_070 0.0985821223 - - PREDICTED: type II inositol 1,4,5-trisphosphate 5-phosphatase FRA3 isoform X2 [Jatropha curcas]
11 Hb_010175_020 0.0988779883 - - PREDICTED: cysteine desulfurase, mitochondrial isoform X1 [Jatropha curcas]
12 Hb_009393_050 0.0994404059 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
13 Hb_000100_070 0.099695613 - - PREDICTED: pre-mRNA-splicing factor ISY1 homolog [Jatropha curcas]
14 Hb_000661_050 0.100393325 - - PREDICTED: ankyrin repeat domain-containing protein 13C-like [Jatropha curcas]
15 Hb_005977_090 0.102711125 - - PREDICTED: F-box/kelch-repeat protein At1g16250 [Jatropha curcas]
16 Hb_000808_180 0.1033116394 - - PREDICTED: pentatricopeptide repeat-containing protein At1g09190 [Jatropha curcas]
17 Hb_124315_020 0.1036648706 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
18 Hb_001541_020 0.1043145259 - - PREDICTED: uncharacterized protein At3g49055 [Jatropha curcas]
19 Hb_005375_030 0.1045749283 - - DEAD/DEAH box helicase factory [Malus domestica]
20 Hb_004724_060 0.1058691324 - - PREDICTED: uncharacterized protein LOC105640155 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001789_210 Hb_001789_210 Hb_007364_010 Hb_007364_010 Hb_001789_210--Hb_007364_010 Hb_002798_040 Hb_002798_040 Hb_001789_210--Hb_002798_040 Hb_001638_250 Hb_001638_250 Hb_001789_210--Hb_001638_250 Hb_004934_090 Hb_004934_090 Hb_001789_210--Hb_004934_090 Hb_001736_040 Hb_001736_040 Hb_001789_210--Hb_001736_040 Hb_006649_060 Hb_006649_060 Hb_001789_210--Hb_006649_060 Hb_000977_180 Hb_000977_180 Hb_007364_010--Hb_000977_180 Hb_007364_010--Hb_004934_090 Hb_000703_080 Hb_000703_080 Hb_007364_010--Hb_000703_080 Hb_010710_110 Hb_010710_110 Hb_007364_010--Hb_010710_110 Hb_025557_010 Hb_025557_010 Hb_007364_010--Hb_025557_010 Hb_004452_100 Hb_004452_100 Hb_002798_040--Hb_004452_100 Hb_000100_070 Hb_000100_070 Hb_002798_040--Hb_000100_070 Hb_001366_040 Hb_001366_040 Hb_002798_040--Hb_001366_040 Hb_000244_250 Hb_000244_250 Hb_002798_040--Hb_000244_250 Hb_011318_010 Hb_011318_010 Hb_002798_040--Hb_011318_010 Hb_010931_080 Hb_010931_080 Hb_002798_040--Hb_010931_080 Hb_005977_090 Hb_005977_090 Hb_001638_250--Hb_005977_090 Hb_028487_110 Hb_028487_110 Hb_001638_250--Hb_028487_110 Hb_001638_250--Hb_004934_090 Hb_001680_010 Hb_001680_010 Hb_001638_250--Hb_001680_010 Hb_000002_040 Hb_000002_040 Hb_001638_250--Hb_000002_040 Hb_001541_020 Hb_001541_020 Hb_001638_250--Hb_001541_020 Hb_002097_090 Hb_002097_090 Hb_004934_090--Hb_002097_090 Hb_004096_030 Hb_004096_030 Hb_004934_090--Hb_004096_030 Hb_005245_130 Hb_005245_130 Hb_004934_090--Hb_005245_130 Hb_002030_030 Hb_002030_030 Hb_004934_090--Hb_002030_030 Hb_000803_300 Hb_000803_300 Hb_004934_090--Hb_000803_300 Hb_003994_240 Hb_003994_240 Hb_004934_090--Hb_003994_240 Hb_000661_050 Hb_000661_050 Hb_001736_040--Hb_000661_050 Hb_002477_030 Hb_002477_030 Hb_001736_040--Hb_002477_030 Hb_000317_020 Hb_000317_020 Hb_001736_040--Hb_000317_020 Hb_000152_820 Hb_000152_820 Hb_001736_040--Hb_000152_820 Hb_000827_070 Hb_000827_070 Hb_001736_040--Hb_000827_070 Hb_000977_070 Hb_000977_070 Hb_001736_040--Hb_000977_070 Hb_007586_030 Hb_007586_030 Hb_006649_060--Hb_007586_030 Hb_002150_030 Hb_002150_030 Hb_006649_060--Hb_002150_030 Hb_006649_060--Hb_001541_020 Hb_000031_050 Hb_000031_050 Hb_006649_060--Hb_000031_050 Hb_022408_010 Hb_022408_010 Hb_006649_060--Hb_022408_010 Hb_183963_030 Hb_183963_030 Hb_006649_060--Hb_183963_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.2793 19.8296 3.6006 4.80131 25.432 22.8766
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.1169 14.1713 17.966 12.2207 13.9571

CAGE analysis