Hb_001789_240

Information

Type -
Description -
Location Contig1789: 218407-222442
Sequence    

Annotation

kegg
ID crb:CARUB_v10026686mg
description hypothetical protein
nr
ID XP_006437601.1
description hypothetical protein CICLE_v10032221mg [Citrus clementina]
swissprot
ID Q9FEF8
description Probable mediator of RNA polymerase II transcription subunit 36b OS=Arabidopsis thaliana GN=MED36B PE=1 SV=1
trembl
ID V4TLZ7
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032221mg PE=4 SV=1
Gene Ontology
ID GO:0005730
description mediator of rna polymerase ii transcription subunit 36a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17238: 218302-222460 , PASA_asmbl_17239: 221158-221452
cDNA
(Sanger)
(ID:Location)		 034_F02.ab1: 218302-219484

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001789_240 0.0 - - hypothetical protein CICLE_v10032221mg [Citrus clementina]
2 Hb_063090_010 0.0671581823 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X2 [Jatropha curcas]
3 Hb_000373_240 0.0721478708 - - PREDICTED: uncharacterized protein LOC105640940 isoform X1 [Jatropha curcas]
4 Hb_009133_010 0.0728071077 - - PREDICTED: L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase-like [Jatropha curcas]
5 Hb_006692_030 0.074795525 - - PREDICTED: uncharacterized protein LOC105632913 [Jatropha curcas]
6 Hb_002205_040 0.0812981368 - - nucleic acid binding protein, putative [Ricinus communis]
7 Hb_002391_300 0.0819305611 - - hypothetical protein PHAVU_002G104100g [Phaseolus vulgaris]
8 Hb_004096_030 0.0837594157 - - PREDICTED: KH domain-containing protein At4g18375-like isoform X1 [Jatropha curcas]
9 Hb_002079_010 0.0856851237 - - hypothetical protein POPTR_0001s01970g [Populus trichocarpa]
10 Hb_018838_030 0.0867577059 - - conserved hypothetical protein [Ricinus communis]
11 Hb_033642_010 0.0878818495 - - PREDICTED: protection of telomeres protein 1a-like isoform X2 [Jatropha curcas]
12 Hb_001545_120 0.0880561433 - - PREDICTED: pentatricopeptide repeat-containing protein At1g34160 [Jatropha curcas]
13 Hb_000189_340 0.088078387 - - PREDICTED: 40S ribosomal protein S3a-1 [Jatropha curcas]
14 Hb_000157_030 0.0881771165 - - PREDICTED: cytochrome b5 domain-containing protein RLF [Jatropha curcas]
15 Hb_003010_030 0.0883436813 - - ribonuclease p/mrp subunit, putative [Ricinus communis]
16 Hb_000373_280 0.0893584369 - - PREDICTED: sterol 3-beta-glucosyltransferase UGT80B1 isoform X1 [Jatropha curcas]
17 Hb_004724_190 0.0895842839 - - NITRILASE-LIKE protein 1 [Populus trichocarpa]
18 Hb_001157_060 0.0926572018 - - PREDICTED: putative nitric oxide synthase [Jatropha curcas]
19 Hb_012008_020 0.0933026475 - - PREDICTED: uncharacterized protein LOC104233229 [Nicotiana sylvestris]
20 Hb_000889_020 0.0944238339 - - ribosome biogenesis protein brix, putative [Ricinus communis]

Gene co-expression network

sample Hb_001789_240 Hb_001789_240 Hb_063090_010 Hb_063090_010 Hb_001789_240--Hb_063090_010 Hb_000373_240 Hb_000373_240 Hb_001789_240--Hb_000373_240 Hb_009133_010 Hb_009133_010 Hb_001789_240--Hb_009133_010 Hb_006692_030 Hb_006692_030 Hb_001789_240--Hb_006692_030 Hb_002205_040 Hb_002205_040 Hb_001789_240--Hb_002205_040 Hb_002391_300 Hb_002391_300 Hb_001789_240--Hb_002391_300 Hb_002079_010 Hb_002079_010 Hb_063090_010--Hb_002079_010 Hb_018838_030 Hb_018838_030 Hb_063090_010--Hb_018838_030 Hb_005993_040 Hb_005993_040 Hb_063090_010--Hb_005993_040 Hb_000853_170 Hb_000853_170 Hb_063090_010--Hb_000853_170 Hb_006400_030 Hb_006400_030 Hb_063090_010--Hb_006400_030 Hb_000373_240--Hb_002391_300 Hb_000889_020 Hb_000889_020 Hb_000373_240--Hb_000889_020 Hb_003406_010 Hb_003406_010 Hb_000373_240--Hb_003406_010 Hb_007218_080 Hb_007218_080 Hb_000373_240--Hb_007218_080 Hb_000690_130 Hb_000690_130 Hb_000373_240--Hb_000690_130 Hb_009133_010--Hb_006692_030 Hb_004724_190 Hb_004724_190 Hb_009133_010--Hb_004724_190 Hb_009133_010--Hb_063090_010 Hb_005839_060 Hb_005839_060 Hb_009133_010--Hb_005839_060 Hb_009133_010--Hb_000889_020 Hb_000032_570 Hb_000032_570 Hb_006692_030--Hb_000032_570 Hb_006692_030--Hb_007218_080 Hb_006692_030--Hb_000889_020 Hb_000120_500 Hb_000120_500 Hb_006692_030--Hb_000120_500 Hb_023386_040 Hb_023386_040 Hb_002205_040--Hb_023386_040 Hb_002890_020 Hb_002890_020 Hb_002205_040--Hb_002890_020 Hb_001014_050 Hb_001014_050 Hb_002205_040--Hb_001014_050 Hb_000926_190 Hb_000926_190 Hb_002205_040--Hb_000926_190 Hb_000207_310 Hb_000207_310 Hb_002205_040--Hb_000207_310 Hb_022693_120 Hb_022693_120 Hb_002205_040--Hb_022693_120 Hb_002391_300--Hb_003406_010 Hb_000926_280 Hb_000926_280 Hb_002391_300--Hb_000926_280 Hb_004440_090 Hb_004440_090 Hb_002391_300--Hb_004440_090 Hb_012092_010 Hb_012092_010 Hb_002391_300--Hb_012092_010 Hb_002391_300--Hb_007218_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
129.724 61.4948 48.6681 33.2628 135.553 208.131
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
117.729 155.976 76.6231 86.2618 62.1448

CAGE analysis