Hb_001790_020

Information

Type -
Description -
Location Contig1790: 16098-20233
Sequence    

Annotation

kegg
ID rcu:RCOM_0852530
description hypothetical protein
nr
ID XP_012082275.1
description PREDICTED: uncharacterized protein LOC105642165 [Jatropha curcas]
swissprot
ID Q6NZC7
description SEC23-interacting protein OS=Mus musculus GN=Sec23ip PE=2 SV=2
trembl
ID A0A067LDU1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09662 PE=4 SV=1
Gene Ontology
ID GO:0005515
description protein bicaudal c homolog 1-a isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17304: 16138-20186 , PASA_asmbl_17305: 18128-18353
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001790_020 0.0 - - PREDICTED: uncharacterized protein LOC105642165 [Jatropha curcas]
2 Hb_012634_010 0.0597291937 - - PREDICTED: uncharacterized protein LOC105110292 [Populus euphratica]
3 Hb_001571_040 0.063910563 - - PREDICTED: uncharacterized protein LOC105643972 [Jatropha curcas]
4 Hb_106371_010 0.066009663 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
5 Hb_000321_070 0.0696975691 - - protein with unknown function [Ricinus communis]
6 Hb_000160_040 0.0720389119 - - PREDICTED: methyltransferase-like protein 10 [Jatropha curcas]
7 Hb_000123_210 0.0721069956 - - PREDICTED: uncharacterized protein LOC105641576 isoform X2 [Jatropha curcas]
8 Hb_066182_010 0.0748257425 - - PREDICTED: guanine nucleotide-binding protein subunit beta-like protein [Jatropha curcas]
9 Hb_002477_280 0.0748408496 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-2 [Jatropha curcas]
10 Hb_000300_060 0.0774686418 - - PREDICTED: F-box protein SKIP24 [Jatropha curcas]
11 Hb_000676_110 0.0784749804 - - glycosyl transferase family 1 family protein [Populus trichocarpa]
12 Hb_000030_040 0.0807979772 - - yth domain-containing protein, putative [Ricinus communis]
13 Hb_000085_160 0.0812620296 - - hypothetical protein CICLE_v10009012mg [Citrus clementina]
14 Hb_015292_030 0.0813866553 - - PREDICTED: pentatricopeptide repeat-containing protein At3g02490, mitochondrial [Jatropha curcas]
15 Hb_007101_170 0.0821530461 - - hypothetical protein POPTR_0010s10490g [Populus trichocarpa]
16 Hb_005276_210 0.0835477123 - - PREDICTED: DNA repair helicase UVH6 isoform X2 [Jatropha curcas]
17 Hb_000011_200 0.0859111037 - - PREDICTED: 26S protease regulatory subunit 7 isoform X1 [Jatropha curcas]
18 Hb_000225_040 0.0863579831 - - PREDICTED: translation factor GUF1 homolog, mitochondrial [Nelumbo nucifera]
19 Hb_005188_050 0.0866188228 - - PREDICTED: DNA-directed RNA polymerase 2B, chloroplastic/mitochondrial isoform X1 [Jatropha curcas]
20 Hb_006827_020 0.0871487736 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001790_020 Hb_001790_020 Hb_012634_010 Hb_012634_010 Hb_001790_020--Hb_012634_010 Hb_001571_040 Hb_001571_040 Hb_001790_020--Hb_001571_040 Hb_106371_010 Hb_106371_010 Hb_001790_020--Hb_106371_010 Hb_000321_070 Hb_000321_070 Hb_001790_020--Hb_000321_070 Hb_000160_040 Hb_000160_040 Hb_001790_020--Hb_000160_040 Hb_000123_210 Hb_000123_210 Hb_001790_020--Hb_000123_210 Hb_002026_100 Hb_002026_100 Hb_012634_010--Hb_002026_100 Hb_002027_260 Hb_002027_260 Hb_012634_010--Hb_002027_260 Hb_012634_010--Hb_001571_040 Hb_006400_040 Hb_006400_040 Hb_012634_010--Hb_006400_040 Hb_082609_020 Hb_082609_020 Hb_012634_010--Hb_082609_020 Hb_000300_060 Hb_000300_060 Hb_001571_040--Hb_000300_060 Hb_000032_570 Hb_000032_570 Hb_001571_040--Hb_000032_570 Hb_006332_020 Hb_006332_020 Hb_001571_040--Hb_006332_020 Hb_066182_010 Hb_066182_010 Hb_001571_040--Hb_066182_010 Hb_003090_080 Hb_003090_080 Hb_106371_010--Hb_003090_080 Hb_106371_010--Hb_000160_040 Hb_016898_010 Hb_016898_010 Hb_106371_010--Hb_016898_010 Hb_033834_060 Hb_033834_060 Hb_106371_010--Hb_033834_060 Hb_003952_150 Hb_003952_150 Hb_106371_010--Hb_003952_150 Hb_000085_160 Hb_000085_160 Hb_000321_070--Hb_000085_160 Hb_000321_070--Hb_001571_040 Hb_000245_130 Hb_000245_130 Hb_000321_070--Hb_000245_130 Hb_000103_180 Hb_000103_180 Hb_000321_070--Hb_000103_180 Hb_039837_010 Hb_039837_010 Hb_000321_070--Hb_039837_010 Hb_009627_010 Hb_009627_010 Hb_000160_040--Hb_009627_010 Hb_009620_040 Hb_009620_040 Hb_000160_040--Hb_009620_040 Hb_000768_110 Hb_000768_110 Hb_000160_040--Hb_000768_110 Hb_000173_510 Hb_000173_510 Hb_000160_040--Hb_000173_510 Hb_000160_040--Hb_003090_080 Hb_001143_160 Hb_001143_160 Hb_000123_210--Hb_001143_160 Hb_000011_200 Hb_000011_200 Hb_000123_210--Hb_000011_200 Hb_000225_040 Hb_000225_040 Hb_000123_210--Hb_000225_040 Hb_000193_190 Hb_000193_190 Hb_000123_210--Hb_000193_190 Hb_006827_020 Hb_006827_020 Hb_000123_210--Hb_006827_020 Hb_123352_020 Hb_123352_020 Hb_000123_210--Hb_123352_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
72.3554 44.4025 18.058 30.7296 81.18 76.0858
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
57.4685 63.5257 55.2864 64.0361 24.8058

CAGE analysis