Hb_001790_060

Information

Type -
Description -
Location Contig1790: 47292-47534
Sequence    

Annotation

kegg
ID mdm:103455532
description putative ribonuclease H protein At1g65750
nr
ID XP_012085858.1
description PREDICTED: uncharacterized protein LOC105644961 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A0B2QFV8
description Putative ribonuclease H protein OS=Glycine soja GN=glysoja_039714 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001790_060 0.0 - - PREDICTED: uncharacterized protein LOC105644961 [Jatropha curcas]
2 Hb_133076_010 0.0453275272 - - PREDICTED: scopoletin glucosyltransferase-like [Populus euphratica]
3 Hb_001894_100 0.052002759 - - PREDICTED: kininogen-1-like [Jatropha curcas]
4 Hb_000268_050 0.0752493081 - - PREDICTED: tetrapyrrole-binding protein, chloroplastic [Jatropha curcas]
5 Hb_003528_100 0.0798680666 - - beta-1,3-glucuronyltransferase, putative [Ricinus communis]
6 Hb_000223_090 0.0831256479 - - Blue copper protein precursor, putative [Ricinus communis]
7 Hb_005348_050 0.0837946615 - - beta-galactosidase, putative [Ricinus communis]
8 Hb_000160_120 0.0839067809 - - conserved hypothetical protein [Ricinus communis]
9 Hb_046825_010 0.0870987069 - - PREDICTED: uncharacterized protein LOC104800023, partial [Tarenaya hassleriana]
10 Hb_001437_170 0.0872739569 - - hypothetical protein POPTR_0009s01390g [Populus trichocarpa]
11 Hb_002329_050 0.088003968 - - conserved hypothetical protein [Ricinus communis]
12 Hb_065774_010 0.08805329 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP16-3, chloroplastic [Jatropha curcas]
13 Hb_096907_010 0.0882689877 - - PREDICTED: uncharacterized protein LOC104800023, partial [Tarenaya hassleriana]
14 Hb_003151_020 0.0900941331 - - Ankyrin repeat family protein, putative [Theobroma cacao]
15 Hb_000540_080 0.0906980503 - - PREDICTED: laccase-17 [Jatropha curcas]
16 Hb_006573_240 0.0916507449 - - PREDICTED: anthocyanidin 5,3-O-glucosyltransferase-like [Jatropha curcas]
17 Hb_000363_070 0.0952841226 - - conserved hypothetical protein [Ricinus communis]
18 Hb_154064_010 0.0960513694 - - PREDICTED: uncharacterized protein LOC105780682 [Gossypium raimondii]
19 Hb_180094_010 0.0968270648 - - PREDICTED: uncharacterized protein LOC105628311 [Jatropha curcas]
20 Hb_006718_030 0.0983117335 - - ATPase, F1 complex, gamma subunit protein [Theobroma cacao]

Gene co-expression network

sample Hb_001790_060 Hb_001790_060 Hb_133076_010 Hb_133076_010 Hb_001790_060--Hb_133076_010 Hb_001894_100 Hb_001894_100 Hb_001790_060--Hb_001894_100 Hb_000268_050 Hb_000268_050 Hb_001790_060--Hb_000268_050 Hb_003528_100 Hb_003528_100 Hb_001790_060--Hb_003528_100 Hb_000223_090 Hb_000223_090 Hb_001790_060--Hb_000223_090 Hb_005348_050 Hb_005348_050 Hb_001790_060--Hb_005348_050 Hb_000540_080 Hb_000540_080 Hb_133076_010--Hb_000540_080 Hb_000363_070 Hb_000363_070 Hb_133076_010--Hb_000363_070 Hb_133076_010--Hb_001894_100 Hb_045260_010 Hb_045260_010 Hb_133076_010--Hb_045260_010 Hb_133076_010--Hb_000268_050 Hb_001894_100--Hb_005348_050 Hb_008253_050 Hb_008253_050 Hb_001894_100--Hb_008253_050 Hb_001894_100--Hb_000223_090 Hb_003151_020 Hb_003151_020 Hb_001894_100--Hb_003151_020 Hb_002329_050 Hb_002329_050 Hb_000268_050--Hb_002329_050 Hb_011362_010 Hb_011362_010 Hb_000268_050--Hb_011362_010 Hb_000268_050--Hb_003528_100 Hb_000160_120 Hb_000160_120 Hb_000268_050--Hb_000160_120 Hb_001437_170 Hb_001437_170 Hb_000268_050--Hb_001437_170 Hb_096907_010 Hb_096907_010 Hb_000268_050--Hb_096907_010 Hb_065774_010 Hb_065774_010 Hb_003528_100--Hb_065774_010 Hb_003528_100--Hb_000160_120 Hb_046825_010 Hb_046825_010 Hb_003528_100--Hb_046825_010 Hb_003528_100--Hb_001437_170 Hb_003528_100--Hb_096907_010 Hb_154064_010 Hb_154064_010 Hb_003528_100--Hb_154064_010 Hb_000223_090--Hb_005348_050 Hb_000223_090--Hb_008253_050 Hb_029386_010 Hb_029386_010 Hb_000223_090--Hb_029386_010 Hb_000223_090--Hb_133076_010 Hb_011618_010 Hb_011618_010 Hb_005348_050--Hb_011618_010 Hb_002659_050 Hb_002659_050 Hb_005348_050--Hb_002659_050 Hb_005348_050--Hb_008253_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 2.91565 4.7559 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.256458 13.0721

CAGE analysis