Hb_001793_020

Information

Type -
Description -
Location Contig1793: 15710-17227
Sequence    

Annotation

kegg
ID cme:CYME_CMS064C
description hypothetical protein
nr
ID XP_012065458.1
description PREDICTED: uncharacterized protein LOC105628624 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A0B0MYZ0
description RNA-directed RNA polymerase catalytic subunit OS=Gossypium arboreum GN=F383_04869 PE=4 SV=1
Gene Ontology
ID GO:0005739
description rna-directed rna polymerase catalytic subunit

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17331: 15538-65681 , PASA_asmbl_17332: 15493-65585
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001793_020 0.0 - - PREDICTED: uncharacterized protein LOC105628624 [Jatropha curcas]
2 Hb_000465_440 0.1116865958 - - PREDICTED: polycomb group protein EMBRYONIC FLOWER 2-like [Jatropha curcas]
3 Hb_005333_200 0.1170954442 - - PREDICTED: beta carbonic anhydrase 5, chloroplastic-like [Jatropha curcas]
4 Hb_000665_270 0.1294838499 - - PREDICTED: adenine phosphoribosyltransferase 5 [Jatropha curcas]
5 Hb_000749_200 0.1304797523 - - PREDICTED: plant intracellular Ras-group-related LRR protein 6 isoform X1 [Jatropha curcas]
6 Hb_000402_020 0.1326702967 - - PREDICTED: 2-phytyl-1,4-beta-naphthoquinone methyltransferase, chloroplastic isoform X1 [Jatropha curcas]
7 Hb_000146_030 0.134126479 - - PREDICTED: 50S ribosomal protein L10, chloroplastic [Jatropha curcas]
8 Hb_000123_370 0.1376025988 - - PREDICTED: psbP-like protein 1, chloroplastic [Jatropha curcas]
9 Hb_000061_250 0.138815945 - - hypothetical protein JCGZ_11665 [Jatropha curcas]
10 Hb_006252_030 0.1390928943 - - PREDICTED: uncharacterized protein LOC105638333 [Jatropha curcas]
11 Hb_000322_040 0.1403258048 - - PREDICTED: lycopene epsilon cyclase, chloroplastic [Jatropha curcas]
12 Hb_000152_490 0.1417208259 - - PREDICTED: (6-4)DNA photolyase [Jatropha curcas]
13 Hb_001649_030 0.1444039346 - - PREDICTED: peptide deformylase 1B, chloroplastic [Jatropha curcas]
14 Hb_000076_250 0.1450557192 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003752_090 0.1451784237 - - chitinase, putative [Ricinus communis]
16 Hb_004117_040 0.1461919991 - - PREDICTED: uncharacterized protein LOC105638287 [Jatropha curcas]
17 Hb_003020_250 0.1463156018 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 2 [Jatropha curcas]
18 Hb_000264_280 0.1476957235 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Jatropha curcas]
19 Hb_050514_020 0.1478787653 - - PREDICTED: abscisic acid receptor PYL4 [Jatropha curcas]
20 Hb_003664_030 0.149804327 - - PREDICTED: mitochondrial carnitine/acylcarnitine carrier-like protein [Jatropha curcas]

Gene co-expression network

sample Hb_001793_020 Hb_001793_020 Hb_000465_440 Hb_000465_440 Hb_001793_020--Hb_000465_440 Hb_005333_200 Hb_005333_200 Hb_001793_020--Hb_005333_200 Hb_000665_270 Hb_000665_270 Hb_001793_020--Hb_000665_270 Hb_000749_200 Hb_000749_200 Hb_001793_020--Hb_000749_200 Hb_000402_020 Hb_000402_020 Hb_001793_020--Hb_000402_020 Hb_000146_030 Hb_000146_030 Hb_001793_020--Hb_000146_030 Hb_000465_440--Hb_000665_270 Hb_009288_040 Hb_009288_040 Hb_000465_440--Hb_009288_040 Hb_003752_090 Hb_003752_090 Hb_000465_440--Hb_003752_090 Hb_000336_200 Hb_000336_200 Hb_000465_440--Hb_000336_200 Hb_001649_030 Hb_001649_030 Hb_000465_440--Hb_001649_030 Hb_005333_200--Hb_003752_090 Hb_003209_010 Hb_003209_010 Hb_005333_200--Hb_003209_010 Hb_000152_490 Hb_000152_490 Hb_005333_200--Hb_000152_490 Hb_004117_040 Hb_004117_040 Hb_005333_200--Hb_004117_040 Hb_005333_200--Hb_000465_440 Hb_000665_270--Hb_001649_030 Hb_000665_270--Hb_000336_200 Hb_001269_500 Hb_001269_500 Hb_000665_270--Hb_001269_500 Hb_000358_040 Hb_000358_040 Hb_000665_270--Hb_000358_040 Hb_000665_270--Hb_009288_040 Hb_003683_030 Hb_003683_030 Hb_000749_200--Hb_003683_030 Hb_000056_310 Hb_000056_310 Hb_000749_200--Hb_000056_310 Hb_006252_030 Hb_006252_030 Hb_000749_200--Hb_006252_030 Hb_000749_200--Hb_000465_440 Hb_002400_010 Hb_002400_010 Hb_000749_200--Hb_002400_010 Hb_000934_260 Hb_000934_260 Hb_000749_200--Hb_000934_260 Hb_005618_080 Hb_005618_080 Hb_000402_020--Hb_005618_080 Hb_005116_100 Hb_005116_100 Hb_000402_020--Hb_005116_100 Hb_001959_060 Hb_001959_060 Hb_000402_020--Hb_001959_060 Hb_000402_020--Hb_003752_090 Hb_006829_080 Hb_006829_080 Hb_000402_020--Hb_006829_080 Hb_000402_020--Hb_000056_310 Hb_001047_180 Hb_001047_180 Hb_000146_030--Hb_001047_180 Hb_004459_060 Hb_004459_060 Hb_000146_030--Hb_004459_060 Hb_002411_100 Hb_002411_100 Hb_000146_030--Hb_002411_100 Hb_000146_030--Hb_000402_020 Hb_004007_170 Hb_004007_170 Hb_000146_030--Hb_004007_170 Hb_000322_040 Hb_000322_040 Hb_000146_030--Hb_000322_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.93513 9.74835 46.3602 24.0404 4.49347 7.64451
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.49452 7.11651 0.392423 1.76017 40.1674

CAGE analysis