Hb_001794_040

Information

Type transcription factor
Description TF Family: bHLH
Location Contig1794: 95382-98298
Sequence    

Annotation

kegg
ID rcu:RCOM_1447390
description hypothetical protein
nr
ID XP_012067264.1
description PREDICTED: transcription factor bHLH63 isoform X1 [Jatropha curcas]
swissprot
ID Q8GY61
description Transcription factor bHLH63 OS=Arabidopsis thaliana GN=BHLH63 PE=1 SV=1
trembl
ID A0A067L021
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26804 PE=4 SV=1
Gene Ontology
ID GO:0046983
description transcription factor bhlh63 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17343: 95389-98410 , PASA_asmbl_17344: 95393-98410
cDNA
(Sanger)
(ID:Location)		 015_J23.ab1: 97716-98410 , 029_M24.ab1: 97740-98408

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001794_040 0.0 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH63 isoform X1 [Jatropha curcas]
2 Hb_001117_050 0.06691036 - - E3 ubiquitin-protein ligase UPL5 [Theobroma cacao]
3 Hb_000012_350 0.0691038033 transcription factor TF Family: HB PREDICTED: homeobox protein ATH1 [Jatropha curcas]
4 Hb_020738_010 0.0775896629 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g24230 [Jatropha curcas]
5 Hb_017383_010 0.0792578869 - - PREDICTED: uncharacterized protein LOC105628176 [Jatropha curcas]
6 Hb_000032_420 0.0796210323 - - PREDICTED: GDSL esterase/lipase At4g10955 [Jatropha curcas]
7 Hb_010449_010 0.0868689558 - - l-ascorbate oxidase, putative [Ricinus communis]
8 Hb_000996_070 0.089771968 - - unnamed protein product [Vitis vinifera]
9 Hb_000617_330 0.090263921 - - PREDICTED: uncharacterized protein LOC105647507 [Jatropha curcas]
10 Hb_000077_280 0.0906863619 - - ankyrin repeat-containing protein, putative [Ricinus communis]
11 Hb_015048_020 0.0912930872 - - PREDICTED: myb-like protein D [Jatropha curcas]
12 Hb_006196_030 0.0918887315 - - PREDICTED: uncharacterized protein LOC105650679 [Jatropha curcas]
13 Hb_005542_120 0.0931844501 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 [Jatropha curcas]
14 Hb_003054_070 0.0960063256 transcription factor TF Family: Orphans DNA binding protein, putative [Ricinus communis]
15 Hb_001638_340 0.0964887861 - - conserved hypothetical protein [Ricinus communis]
16 Hb_008895_020 0.0981802594 - - Phospho-N-acetylmuramoyl-pentapeptide-transferase, putative [Theobroma cacao]
17 Hb_000718_060 0.0983625235 transcription factor TF Family: MYB DNA binding protein, putative [Ricinus communis]
18 Hb_007904_280 0.1023581524 - - PREDICTED: uncharacterized protein LOC105644987 [Jatropha curcas]
19 Hb_039075_020 0.1025308185 - - PREDICTED: uncharacterized protein LOC103331245 [Prunus mume]
20 Hb_011574_020 0.1027894548 - - hypothetical protein JCGZ_21524 [Jatropha curcas]

Gene co-expression network

sample Hb_001794_040 Hb_001794_040 Hb_001117_050 Hb_001117_050 Hb_001794_040--Hb_001117_050 Hb_000012_350 Hb_000012_350 Hb_001794_040--Hb_000012_350 Hb_020738_010 Hb_020738_010 Hb_001794_040--Hb_020738_010 Hb_017383_010 Hb_017383_010 Hb_001794_040--Hb_017383_010 Hb_000032_420 Hb_000032_420 Hb_001794_040--Hb_000032_420 Hb_010449_010 Hb_010449_010 Hb_001794_040--Hb_010449_010 Hb_005542_120 Hb_005542_120 Hb_001117_050--Hb_005542_120 Hb_008054_030 Hb_008054_030 Hb_001117_050--Hb_008054_030 Hb_000392_110 Hb_000392_110 Hb_001117_050--Hb_000392_110 Hb_008221_200 Hb_008221_200 Hb_001117_050--Hb_008221_200 Hb_010164_030 Hb_010164_030 Hb_001117_050--Hb_010164_030 Hb_011574_020 Hb_011574_020 Hb_000012_350--Hb_011574_020 Hb_000012_350--Hb_010164_030 Hb_000012_350--Hb_020738_010 Hb_001427_100 Hb_001427_100 Hb_000012_350--Hb_001427_100 Hb_000827_020 Hb_000827_020 Hb_000012_350--Hb_000827_020 Hb_020738_010--Hb_011574_020 Hb_059275_010 Hb_059275_010 Hb_020738_010--Hb_059275_010 Hb_050898_030 Hb_050898_030 Hb_020738_010--Hb_050898_030 Hb_000077_280 Hb_000077_280 Hb_020738_010--Hb_000077_280 Hb_017383_010--Hb_010449_010 Hb_017383_010--Hb_000032_420 Hb_000103_220 Hb_000103_220 Hb_017383_010--Hb_000103_220 Hb_017383_010--Hb_000077_280 Hb_017434_010 Hb_017434_010 Hb_017383_010--Hb_017434_010 Hb_000032_420--Hb_010449_010 Hb_001544_090 Hb_001544_090 Hb_000032_420--Hb_001544_090 Hb_000996_070 Hb_000996_070 Hb_000032_420--Hb_000996_070 Hb_015048_020 Hb_015048_020 Hb_000032_420--Hb_015048_020 Hb_000441_130 Hb_000441_130 Hb_000032_420--Hb_000441_130 Hb_010449_010--Hb_017434_010 Hb_010449_010--Hb_000103_220 Hb_010449_010--Hb_000996_070 Hb_098315_060 Hb_098315_060 Hb_010449_010--Hb_098315_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0246415 5.55035 16.4328 23.3504 0.10786 0.045909
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.17869 11.0729

CAGE analysis