Hb_001794_060

Information

Type -
Description -
Location Contig1794: 117033-117545
Sequence    

Annotation

kegg
ID rcu:RCOM_1687250
description hypothetical protein
nr
ID XP_002509827.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RCE3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1687250 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001794_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002572_050 0.1182148031 transcription factor TF Family: PLATZ protein with unknown function [Ricinus communis]
3 Hb_126380_010 0.130423498 desease resistance Gene Name: NB-ARC ATP binding protein, putative [Ricinus communis]
4 Hb_001369_570 0.1305567631 - - hypothetical protein JCGZ_26236 [Jatropha curcas]
5 Hb_008511_100 0.1338952048 - - hypothetical protein POPTR_0009s11860g [Populus trichocarpa]
6 Hb_001944_020 0.1412773388 - - PREDICTED: uncharacterized protein LOC105636535 [Jatropha curcas]
7 Hb_001433_140 0.1473145364 - - PREDICTED: phospholipase D p1 [Jatropha curcas]
8 Hb_002701_220 0.154577498 - - PREDICTED: solute carrier family 25 member 44 [Jatropha curcas]
9 Hb_002097_200 0.1547709456 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
10 Hb_000953_050 0.1600699985 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105629451 [Jatropha curcas]
11 Hb_001411_140 0.1615883423 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2 [Jatropha curcas]
12 Hb_005496_180 0.1634699952 - - PREDICTED: U-box domain-containing protein 4-like [Jatropha curcas]
13 Hb_000120_160 0.1646146737 - - unnamed protein product [Vitis vinifera]
14 Hb_000345_200 0.1671170967 - - PREDICTED: uncharacterized protein LOC105647522 [Jatropha curcas]
15 Hb_012107_010 0.1678596632 - - hypothetical protein JCGZ_19531 [Jatropha curcas]
16 Hb_002027_160 0.1700874069 - - sugar transporter, putative [Ricinus communis]
17 Hb_000056_170 0.172735162 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000417_420 0.1748085653 - - PREDICTED: U-box domain-containing protein 17 [Jatropha curcas]
19 Hb_003747_210 0.1781155104 - - PREDICTED: uncharacterized protein LOC105630240 [Jatropha curcas]
20 Hb_012573_040 0.1791671953 - - PREDICTED: F-box/kelch-repeat protein At1g55270-like [Jatropha curcas]

Gene co-expression network

sample Hb_001794_060 Hb_001794_060 Hb_002572_050 Hb_002572_050 Hb_001794_060--Hb_002572_050 Hb_126380_010 Hb_126380_010 Hb_001794_060--Hb_126380_010 Hb_001369_570 Hb_001369_570 Hb_001794_060--Hb_001369_570 Hb_008511_100 Hb_008511_100 Hb_001794_060--Hb_008511_100 Hb_001944_020 Hb_001944_020 Hb_001794_060--Hb_001944_020 Hb_001433_140 Hb_001433_140 Hb_001794_060--Hb_001433_140 Hb_000953_050 Hb_000953_050 Hb_002572_050--Hb_000953_050 Hb_005496_180 Hb_005496_180 Hb_002572_050--Hb_005496_180 Hb_002572_050--Hb_001369_570 Hb_000215_350 Hb_000215_350 Hb_002572_050--Hb_000215_350 Hb_002572_050--Hb_008511_100 Hb_000345_200 Hb_000345_200 Hb_126380_010--Hb_000345_200 Hb_001205_030 Hb_001205_030 Hb_126380_010--Hb_001205_030 Hb_126380_010--Hb_008511_100 Hb_189208_020 Hb_189208_020 Hb_126380_010--Hb_189208_020 Hb_002097_200 Hb_002097_200 Hb_126380_010--Hb_002097_200 Hb_001369_570--Hb_000953_050 Hb_028207_040 Hb_028207_040 Hb_001369_570--Hb_028207_040 Hb_001369_570--Hb_005496_180 Hb_001525_010 Hb_001525_010 Hb_001369_570--Hb_001525_010 Hb_008511_100--Hb_002097_200 Hb_008511_100--Hb_000953_050 Hb_001288_070 Hb_001288_070 Hb_008511_100--Hb_001288_070 Hb_008511_100--Hb_005496_180 Hb_008511_100--Hb_189208_020 Hb_002701_220 Hb_002701_220 Hb_001944_020--Hb_002701_220 Hb_002217_090 Hb_002217_090 Hb_001944_020--Hb_002217_090 Hb_012107_010 Hb_012107_010 Hb_001944_020--Hb_012107_010 Hb_002053_130 Hb_002053_130 Hb_001944_020--Hb_002053_130 Hb_003747_210 Hb_003747_210 Hb_001944_020--Hb_003747_210 Hb_001500_030 Hb_001500_030 Hb_001944_020--Hb_001500_030 Hb_001433_140--Hb_008511_100 Hb_002639_100 Hb_002639_100 Hb_001433_140--Hb_002639_100 Hb_008066_070 Hb_008066_070 Hb_001433_140--Hb_008066_070 Hb_001433_140--Hb_003747_210 Hb_001433_140--Hb_002097_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.376338 4.26958 0.304551 1.27778 0.332977 0.49329
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.772288 1.618 1.20541 1.00661 1.14065

CAGE analysis