Hb_001797_030

Information

Type -
Description -
Location Contig1797: 105013-106200
Sequence    

Annotation

kegg
ID cmo:103497647
description uncharacterized LOC103497647
nr
ID XP_009786188.1
description PREDICTED: uncharacterized protein LOC104234330 [Nicotiana sylvestris]
swissprot
ID -
description -
trembl
ID M5X4P9
description Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa025968mg PE=4 SV=1
Gene Ontology
ID GO:0003676
description PREDICTED: uncharacterized protein LOC104234330

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001797_030 0.0 - - PREDICTED: uncharacterized protein LOC104234330 [Nicotiana sylvestris]
2 Hb_004724_050 0.2586182077 transcription factor TF Family: bZIP conserved hypothetical protein [Ricinus communis]
3 Hb_000497_240 0.2648576742 transcription factor TF Family: C2H2 PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
4 Hb_005694_100 0.2898561647 - - PREDICTED: calcium-binding protein KIC-like [Populus euphratica]
5 Hb_140465_010 0.2933674156 - - PREDICTED: MLP-like protein 423 [Jatropha curcas]
6 Hb_000803_160 0.2980481661 - - hypothetical protein JCGZ_25955 [Jatropha curcas]
7 Hb_000668_100 0.3083071776 - - PREDICTED: non-specific lipid-transfer protein-like protein At2g13820 [Jatropha curcas]
8 Hb_188739_010 0.3135920084 - - protein binding protein, putative [Ricinus communis]
9 Hb_000245_170 0.3192248653 - - ankyrin repeat-containing protein, putative [Ricinus communis]
10 Hb_004542_010 0.3286107788 - - Putative chloroplast RF19 [Medicago truncatula]
11 Hb_000574_380 0.330277597 - - hydrolase, putative [Ricinus communis]
12 Hb_002817_010 0.3329221146 - - PREDICTED: uncharacterized protein LOC105630103 isoform X2 [Jatropha curcas]
13 Hb_000207_140 0.3340661653 - - hypothetical protein POPTR_0019s11310g [Populus trichocarpa]
14 Hb_002301_330 0.338668129 - - PREDICTED: late embryogenesis abundant protein, group 3-like [Jatropha curcas]
15 Hb_011609_130 0.3418679472 - - -
16 Hb_002639_170 0.3422544966 - - carboxy-lyase, putative [Ricinus communis]
17 Hb_002435_090 0.3433698998 - - PREDICTED: membrane-associated 30 kDa protein, chloroplastic [Jatropha curcas]
18 Hb_000028_150 0.3443126411 transcription factor TF Family: Tify PREDICTED: protein TIFY 6B isoform X1 [Jatropha curcas]
19 Hb_031862_160 0.3447947957 - - unnamed protein product [Vitis vinifera]
20 Hb_000261_530 0.3448128882 - - PREDICTED: beta-glucosidase 18-like [Jatropha curcas]

Gene co-expression network

sample Hb_001797_030 Hb_001797_030 Hb_004724_050 Hb_004724_050 Hb_001797_030--Hb_004724_050 Hb_000497_240 Hb_000497_240 Hb_001797_030--Hb_000497_240 Hb_005694_100 Hb_005694_100 Hb_001797_030--Hb_005694_100 Hb_140465_010 Hb_140465_010 Hb_001797_030--Hb_140465_010 Hb_000803_160 Hb_000803_160 Hb_001797_030--Hb_000803_160 Hb_000668_100 Hb_000668_100 Hb_001797_030--Hb_000668_100 Hb_000049_220 Hb_000049_220 Hb_004724_050--Hb_000049_220 Hb_003228_090 Hb_003228_090 Hb_004724_050--Hb_003228_090 Hb_000245_170 Hb_000245_170 Hb_004724_050--Hb_000245_170 Hb_134546_010 Hb_134546_010 Hb_004724_050--Hb_134546_010 Hb_000608_330 Hb_000608_330 Hb_004724_050--Hb_000608_330 Hb_007002_050 Hb_007002_050 Hb_000497_240--Hb_007002_050 Hb_005162_120 Hb_005162_120 Hb_000497_240--Hb_005162_120 Hb_044662_050 Hb_044662_050 Hb_000497_240--Hb_044662_050 Hb_002639_170 Hb_002639_170 Hb_000497_240--Hb_002639_170 Hb_002218_100 Hb_002218_100 Hb_000497_240--Hb_002218_100 Hb_004586_310 Hb_004586_310 Hb_000497_240--Hb_004586_310 Hb_005694_100--Hb_000668_100 Hb_002301_330 Hb_002301_330 Hb_005694_100--Hb_002301_330 Hb_000417_270 Hb_000417_270 Hb_005694_100--Hb_000417_270 Hb_001022_020 Hb_001022_020 Hb_005694_100--Hb_001022_020 Hb_008059_040 Hb_008059_040 Hb_005694_100--Hb_008059_040 Hb_065256_010 Hb_065256_010 Hb_005694_100--Hb_065256_010 Hb_137862_010 Hb_137862_010 Hb_140465_010--Hb_137862_010 Hb_006970_040 Hb_006970_040 Hb_140465_010--Hb_006970_040 Hb_033312_120 Hb_033312_120 Hb_140465_010--Hb_033312_120 Hb_140465_010--Hb_000803_160 Hb_001021_020 Hb_001021_020 Hb_140465_010--Hb_001021_020 Hb_000189_460 Hb_000189_460 Hb_140465_010--Hb_000189_460 Hb_002762_030 Hb_002762_030 Hb_000803_160--Hb_002762_030 Hb_010642_020 Hb_010642_020 Hb_000803_160--Hb_010642_020 Hb_002759_080 Hb_002759_080 Hb_000803_160--Hb_002759_080 Hb_140360_010 Hb_140360_010 Hb_000803_160--Hb_140360_010 Hb_000637_070 Hb_000637_070 Hb_000803_160--Hb_000637_070 Hb_000668_100--Hb_008059_040 Hb_005511_080 Hb_005511_080 Hb_000668_100--Hb_005511_080 Hb_000668_100--Hb_001022_020 Hb_001241_020 Hb_001241_020 Hb_000668_100--Hb_001241_020 Hb_001218_060 Hb_001218_060 Hb_000668_100--Hb_001218_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0683766 0.0195704 0.32656 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0351729 0 0 0.0724464

CAGE analysis