Hb_001797_050

Information

Type transcription factor
Description TF Family: FAR1
Location Contig1797: 126639-135815
Sequence    

Annotation

kegg
ID pmum:103331052
description protein FAR1-RELATED SEQUENCE 3-like
nr
ID XP_012087525.1
description PREDICTED: protein FAR1-RELATED SEQUENCE 3-like isoform X1 [Jatropha curcas]
swissprot
ID Q9ZVC9
description Protein FAR1-RELATED SEQUENCE 3 OS=Arabidopsis thaliana GN=FRS3 PE=2 SV=2
trembl
ID A0A067JQ59
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24409 PE=4 SV=1
Gene Ontology
ID GO:0008270
description protein far1-related sequence 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17357: 126764-127690 , PASA_asmbl_17358: 127766-128638 , PASA_asmbl_17359: 128690-128858 , PASA_asmbl_17360: 128999-155528
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001797_050 0.0 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 3-like isoform X1 [Jatropha curcas]
2 Hb_004724_060 0.0552708658 - - PREDICTED: uncharacterized protein LOC105640155 isoform X1 [Jatropha curcas]
3 Hb_000207_390 0.057706653 - - PREDICTED: uncharacterized protein LOC105637143 [Jatropha curcas]
4 Hb_007163_090 0.057874027 - - PREDICTED: protein spt2-like [Jatropha curcas]
5 Hb_009411_010 0.0618131396 - - PREDICTED: uncharacterized protein LOC105645272 [Jatropha curcas]
6 Hb_004204_080 0.06192776 - - diacylglycerol kinase, theta, putative [Ricinus communis]
7 Hb_000803_190 0.0622104589 - - PREDICTED: THUMP domain-containing protein 1 isoform X1 [Jatropha curcas]
8 Hb_005532_050 0.0628782814 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
9 Hb_000283_070 0.0651957483 - - PREDICTED: T-complex protein 1 subunit delta [Jatropha curcas]
10 Hb_004447_060 0.0657214796 - - PREDICTED: uncharacterized protein LOC105636329 isoform X2 [Jatropha curcas]
11 Hb_001301_200 0.0665109076 desease resistance Gene Name: NB-ARC Disease resistance protein RPS2, putative [Ricinus communis]
12 Hb_000101_240 0.0675522617 desease resistance Gene Name: NB-ARC putative disease resistance gene NBS-LRR family protein [Populus trichocarpa]
13 Hb_002150_030 0.0678145842 - - PREDICTED: protein SPA1-RELATED 2 [Jatropha curcas]
14 Hb_007757_110 0.0679607806 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
15 Hb_000244_250 0.0681375284 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1 [Jatropha curcas]
16 Hb_000195_020 0.069256198 - - PREDICTED: pentatricopeptide repeat-containing protein At4g19191, mitochondrial [Jatropha curcas]
17 Hb_001541_020 0.0693463538 - - PREDICTED: uncharacterized protein At3g49055 [Jatropha curcas]
18 Hb_000107_500 0.0701587965 - - PREDICTED: protein FAR1-RELATED SEQUENCE 9 [Jatropha curcas]
19 Hb_007586_030 0.0706156187 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15690-like isoform X1 [Jatropha curcas]
20 Hb_000820_170 0.0706200023 - - PREDICTED: THO complex subunit 4A [Jatropha curcas]

Gene co-expression network

sample Hb_001797_050 Hb_001797_050 Hb_004724_060 Hb_004724_060 Hb_001797_050--Hb_004724_060 Hb_000207_390 Hb_000207_390 Hb_001797_050--Hb_000207_390 Hb_007163_090 Hb_007163_090 Hb_001797_050--Hb_007163_090 Hb_009411_010 Hb_009411_010 Hb_001797_050--Hb_009411_010 Hb_004204_080 Hb_004204_080 Hb_001797_050--Hb_004204_080 Hb_000803_190 Hb_000803_190 Hb_001797_050--Hb_000803_190 Hb_000577_010 Hb_000577_010 Hb_004724_060--Hb_000577_010 Hb_004724_060--Hb_007163_090 Hb_000820_170 Hb_000820_170 Hb_004724_060--Hb_000820_170 Hb_008500_010 Hb_008500_010 Hb_004724_060--Hb_008500_010 Hb_123352_020 Hb_123352_020 Hb_004724_060--Hb_123352_020 Hb_000207_390--Hb_007163_090 Hb_002200_130 Hb_002200_130 Hb_000207_390--Hb_002200_130 Hb_002154_030 Hb_002154_030 Hb_000207_390--Hb_002154_030 Hb_001301_200 Hb_001301_200 Hb_000207_390--Hb_001301_200 Hb_000207_390--Hb_000803_190 Hb_001226_030 Hb_001226_030 Hb_007163_090--Hb_001226_030 Hb_007163_090--Hb_001301_200 Hb_007163_090--Hb_000577_010 Hb_007163_090--Hb_123352_020 Hb_003544_100 Hb_003544_100 Hb_009411_010--Hb_003544_100 Hb_000101_240 Hb_000101_240 Hb_009411_010--Hb_000101_240 Hb_003938_080 Hb_003938_080 Hb_009411_010--Hb_003938_080 Hb_048476_180 Hb_048476_180 Hb_009411_010--Hb_048476_180 Hb_000502_050 Hb_000502_050 Hb_009411_010--Hb_000502_050 Hb_005730_030 Hb_005730_030 Hb_004204_080--Hb_005730_030 Hb_005532_050 Hb_005532_050 Hb_004204_080--Hb_005532_050 Hb_000031_050 Hb_000031_050 Hb_004204_080--Hb_000031_050 Hb_022408_010 Hb_022408_010 Hb_004204_080--Hb_022408_010 Hb_001541_020 Hb_001541_020 Hb_004204_080--Hb_001541_020 Hb_004734_060 Hb_004734_060 Hb_000803_190--Hb_004734_060 Hb_033152_080 Hb_033152_080 Hb_000803_190--Hb_033152_080 Hb_000953_010 Hb_000953_010 Hb_000803_190--Hb_000953_010 Hb_005188_050 Hb_005188_050 Hb_000803_190--Hb_005188_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.5923 12.662 5.58836 6.26568 17.8772 23.5803
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.475 9.00215 15.6852 9.11783 7.1925

CAGE analysis