Hb_001798_040

Information

Type transcription factor
Description TF Family: NAC
Location Contig1798: 36376-36827
Sequence    

Annotation

kegg
ID aly:ARALYDRAFT_918808
description hypothetical protein
nr
ID XP_002864464.1
description hypothetical protein ARALYDRAFT_918808 [Arabidopsis lyrata subsp. lyrata]
swissprot
ID -
description -
trembl
ID D7MLT1
description Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_918808 PE=4 SV=1
Gene Ontology
ID GO:0005634
description nac transcription factor 29-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001798_040 0.0 transcription factor TF Family: NAC hypothetical protein ARALYDRAFT_918808 [Arabidopsis lyrata subsp. lyrata]
2 Hb_005524_010 0.1021495969 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
3 Hb_003812_010 0.2687831185 - - -
4 Hb_012656_010 0.2691097052 - - -
5 Hb_001263_020 0.2691729187 - - -
6 Hb_000487_390 0.269477385 - - PREDICTED: putative pumilio homolog 21 [Jatropha curcas]
7 Hb_001754_220 0.2726875218 - - -
8 Hb_019654_160 0.2900558337 - - Zinc finger protein GIS2 [Medicago truncatula]
9 Hb_012799_090 0.2905822507 - - PREDICTED: pentatricopeptide repeat-containing protein At3g29230-like [Jatropha curcas]
10 Hb_000853_380 0.3010495118 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000866_160 0.3067225103 - - PREDICTED: elicitor-responsive protein 3 [Populus euphratica]
12 Hb_031089_060 0.3074538526 - - -
13 Hb_000457_040 0.3578890629 - - -
14 Hb_000987_090 0.381435518 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
15 Hb_002014_110 0.387078546 - - -
16 Hb_107500_010 0.3871383293 - - -
17 Hb_001268_100 0.4010094119 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein KNUCKLES [Jatropha curcas]
18 Hb_012725_010 0.4037690944 - - -
19 Hb_002185_010 0.4163118307 - - PREDICTED: uncharacterized protein LOC105795658 [Gossypium raimondii]
20 Hb_049415_010 0.4181751317 - - -

Gene co-expression network

sample Hb_001798_040 Hb_001798_040 Hb_005524_010 Hb_005524_010 Hb_001798_040--Hb_005524_010 Hb_003812_010 Hb_003812_010 Hb_001798_040--Hb_003812_010 Hb_012656_010 Hb_012656_010 Hb_001798_040--Hb_012656_010 Hb_001263_020 Hb_001263_020 Hb_001798_040--Hb_001263_020 Hb_000487_390 Hb_000487_390 Hb_001798_040--Hb_000487_390 Hb_001754_220 Hb_001754_220 Hb_001798_040--Hb_001754_220 Hb_000853_380 Hb_000853_380 Hb_005524_010--Hb_000853_380 Hb_000457_040 Hb_000457_040 Hb_005524_010--Hb_000457_040 Hb_005524_010--Hb_000487_390 Hb_005524_010--Hb_001263_020 Hb_005524_010--Hb_012656_010 Hb_003812_010--Hb_012656_010 Hb_003812_010--Hb_001263_020 Hb_003812_010--Hb_000487_390 Hb_003812_010--Hb_001754_220 Hb_019654_160 Hb_019654_160 Hb_003812_010--Hb_019654_160 Hb_012799_090 Hb_012799_090 Hb_003812_010--Hb_012799_090 Hb_012656_010--Hb_001263_020 Hb_012656_010--Hb_000487_390 Hb_012656_010--Hb_001754_220 Hb_012656_010--Hb_019654_160 Hb_012656_010--Hb_012799_090 Hb_001263_020--Hb_000487_390 Hb_001263_020--Hb_001754_220 Hb_001263_020--Hb_019654_160 Hb_001263_020--Hb_012799_090 Hb_000487_390--Hb_001754_220 Hb_000866_160 Hb_000866_160 Hb_000487_390--Hb_000866_160 Hb_000487_390--Hb_019654_160 Hb_001754_220--Hb_019654_160 Hb_001754_220--Hb_012799_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0976731 0 0 0.206105 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.408367 0 0 0

CAGE analysis