Hb_001799_030

Information

Type -
Description -
Location Contig1799: 27489-32962
Sequence    

Annotation

kegg
ID rcu:RCOM_0658160
description ELMO domain-containing protein, putative
nr
ID XP_012083715.1
description PREDICTED: ELMO domain-containing protein C-like [Jatropha curcas]
swissprot
ID Q54YW1
description ELMO domain-containing protein A OS=Dictyostelium discoideum GN=elmoA PE=1 SV=1
trembl
ID A0A067JYB1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14643 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17379: 30857-33177 , PASA_asmbl_17380: 27764-33142 , PASA_asmbl_17382: 28285-28587
cDNA
(Sanger)
(ID:Location)		 044_B13.ab1: 32376-33177

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001799_030 0.0 - - PREDICTED: ELMO domain-containing protein C-like [Jatropha curcas]
2 Hb_002304_150 0.0479552068 - - PREDICTED: protein IQ-DOMAIN 1-like isoform X1 [Jatropha curcas]
3 Hb_000720_040 0.0773635695 - - PREDICTED: replication factor C subunit 2 [Jatropha curcas]
4 Hb_012258_010 0.0826129347 - - PREDICTED: cyclase-associated protein 1 [Jatropha curcas]
5 Hb_000300_500 0.0872639008 - - PREDICTED: uncharacterized protein LOC105632604 [Jatropha curcas]
6 Hb_000110_310 0.0879505134 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase, putative [Ricinus communis]
7 Hb_002681_100 0.0880274386 - - PREDICTED: glucuronokinase 1 [Jatropha curcas]
8 Hb_052805_010 0.0913281627 - - hypothetical protein POPTR_0009s03650g [Populus trichocarpa]
9 Hb_000260_470 0.09199061 - - PREDICTED: uncharacterized protein LOC105649044 [Jatropha curcas]
10 Hb_001711_020 0.0920412088 - - PREDICTED: AP-2 complex subunit mu [Jatropha curcas]
11 Hb_005271_040 0.0929043358 - - PREDICTED: serine racemase [Jatropha curcas]
12 Hb_005054_080 0.0931403213 transcription factor TF Family: LIM Pollen-specific protein SF3, putative [Ricinus communis]
13 Hb_004837_270 0.0938190671 - - PREDICTED: cinnamoyl-CoA reductase 1 [Jatropha curcas]
14 Hb_000270_680 0.0945416041 - - hypothetical protein POPTR_0015s08420g [Populus trichocarpa]
15 Hb_000094_280 0.0945662995 - - PREDICTED: uncharacterized protein LOC105633771 [Jatropha curcas]
16 Hb_000774_020 0.0977901027 - - PREDICTED: DNA damage-inducible protein 1 [Jatropha curcas]
17 Hb_000375_350 0.0979079039 - - PREDICTED: uncharacterized protein LOC105641632 [Jatropha curcas]
18 Hb_001366_370 0.0983108194 - - PREDICTED: aarF domain-containing protein kinase 4 isoform X1 [Jatropha curcas]
19 Hb_001300_150 0.0989125939 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 3 [Jatropha curcas]
20 Hb_011282_060 0.1003798278 - - PREDICTED: bifunctional dihydrofolate reductase-thymidylate synthase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_001799_030 Hb_001799_030 Hb_002304_150 Hb_002304_150 Hb_001799_030--Hb_002304_150 Hb_000720_040 Hb_000720_040 Hb_001799_030--Hb_000720_040 Hb_012258_010 Hb_012258_010 Hb_001799_030--Hb_012258_010 Hb_000300_500 Hb_000300_500 Hb_001799_030--Hb_000300_500 Hb_000110_310 Hb_000110_310 Hb_001799_030--Hb_000110_310 Hb_002681_100 Hb_002681_100 Hb_001799_030--Hb_002681_100 Hb_002304_150--Hb_012258_010 Hb_006132_090 Hb_006132_090 Hb_002304_150--Hb_006132_090 Hb_000375_350 Hb_000375_350 Hb_002304_150--Hb_000375_350 Hb_002304_150--Hb_000110_310 Hb_003728_060 Hb_003728_060 Hb_002304_150--Hb_003728_060 Hb_000720_040--Hb_000300_500 Hb_003994_230 Hb_003994_230 Hb_000720_040--Hb_003994_230 Hb_052805_010 Hb_052805_010 Hb_000720_040--Hb_052805_010 Hb_002936_010 Hb_002936_010 Hb_000720_040--Hb_002936_010 Hb_000948_230 Hb_000948_230 Hb_000720_040--Hb_000948_230 Hb_000783_010 Hb_000783_010 Hb_000720_040--Hb_000783_010 Hb_012258_010--Hb_000375_350 Hb_001300_150 Hb_001300_150 Hb_012258_010--Hb_001300_150 Hb_000345_310 Hb_000345_310 Hb_012258_010--Hb_000345_310 Hb_171376_010 Hb_171376_010 Hb_012258_010--Hb_171376_010 Hb_006455_120 Hb_006455_120 Hb_000300_500--Hb_006455_120 Hb_000637_110 Hb_000637_110 Hb_000300_500--Hb_000637_110 Hb_002754_010 Hb_002754_010 Hb_000300_500--Hb_002754_010 Hb_001159_130 Hb_001159_130 Hb_000300_500--Hb_001159_130 Hb_000603_150 Hb_000603_150 Hb_000300_500--Hb_000603_150 Hb_006153_070 Hb_006153_070 Hb_000110_310--Hb_006153_070 Hb_009898_050 Hb_009898_050 Hb_000110_310--Hb_009898_050 Hb_000579_120 Hb_000579_120 Hb_000110_310--Hb_000579_120 Hb_000270_680 Hb_000270_680 Hb_000110_310--Hb_000270_680 Hb_001472_100 Hb_001472_100 Hb_000110_310--Hb_001472_100 Hb_001268_240 Hb_001268_240 Hb_000110_310--Hb_001268_240 Hb_003057_060 Hb_003057_060 Hb_002681_100--Hb_003057_060 Hb_013575_010 Hb_013575_010 Hb_002681_100--Hb_013575_010 Hb_004058_030 Hb_004058_030 Hb_002681_100--Hb_004058_030 Hb_001511_060 Hb_001511_060 Hb_002681_100--Hb_001511_060 Hb_003304_020 Hb_003304_020 Hb_002681_100--Hb_003304_020 Hb_006573_190 Hb_006573_190 Hb_002681_100--Hb_006573_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.1089 5.48195 20.5624 17.8169 8.98006 10.4877
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.0857 12.9426 14.4528 11.5434 8.0397

CAGE analysis