Hb_001799_050

Information

Type -
Description -
Location Contig1799: 61676-65370
Sequence    

Annotation

kegg
ID vvi:100259885
description plasminogen activator inhibitor 1 RNA-binding protein
nr
ID XP_010661405.1
description PREDICTED: plasminogen activator inhibitor 1 RNA-binding protein [Vitis vinifera]
swissprot
ID -
description -
trembl
ID D7SLZ5
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0021g01420 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17383: 61682-65382 , PASA_asmbl_17384: 62168-62440
cDNA
(Sanger)
(ID:Location)		 001_G04.ab1: 61747-63464

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001799_050 0.0 - - PREDICTED: plasminogen activator inhibitor 1 RNA-binding protein [Vitis vinifera]
2 Hb_000640_310 0.0369412487 - - hypothetical protein JCGZ_14055 [Jatropha curcas]
3 Hb_003633_070 0.0511589373 - - PREDICTED: uncharacterized protein LOC105647493 [Jatropha curcas]
4 Hb_000264_030 0.0628692123 - - PREDICTED: splicing factor 3B subunit 2 [Jatropha curcas]
5 Hb_000556_170 0.0631977002 - - PREDICTED: uncharacterized protein LOC105643102 isoform X2 [Jatropha curcas]
6 Hb_000160_350 0.0635226103 - - PREDICTED: double-stranded RNA-binding protein 4 isoform X3 [Vitis vinifera]
7 Hb_001143_250 0.0644275379 - - PREDICTED: SWI/SNF complex subunit SWI3C isoform X1 [Jatropha curcas]
8 Hb_027760_080 0.0676658632 - - cytochrome P450, putative [Ricinus communis]
9 Hb_000487_420 0.0708310812 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At1g04390 [Jatropha curcas]
10 Hb_000418_140 0.0724051533 - - PREDICTED: DNA damage-binding protein 1a [Jatropha curcas]
11 Hb_140049_040 0.0726490465 - - PREDICTED: uncharacterized protein LOC105632012 [Jatropha curcas]
12 Hb_005260_010 0.07396625 - - PREDICTED: golgin candidate 6 isoform X1 [Jatropha curcas]
13 Hb_000010_360 0.0743280725 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY [Jatropha curcas]
14 Hb_023344_010 0.0748427689 - - PREDICTED: pre-mRNA-processing factor 39 isoform X2 [Jatropha curcas]
15 Hb_000191_130 0.0752489793 - - PREDICTED: RNA polymerase-associated protein CTR9 homolog [Jatropha curcas]
16 Hb_005332_020 0.0757614689 transcription factor TF Family: SNF2 dead box ATP-dependent RNA helicase, putative [Ricinus communis]
17 Hb_000300_360 0.0758263759 - - PREDICTED: exosome component 10 [Jatropha curcas]
18 Hb_000679_340 0.0772217475 - - PREDICTED: uncharacterized protein LOC105650070 isoform X1 [Jatropha curcas]
19 Hb_000236_470 0.0773368636 - - PREDICTED: pentatricopeptide repeat-containing protein At5g55840 [Jatropha curcas]
20 Hb_000664_070 0.0788182554 - - PREDICTED: protein cereblon [Jatropha curcas]

Gene co-expression network

sample Hb_001799_050 Hb_001799_050 Hb_000640_310 Hb_000640_310 Hb_001799_050--Hb_000640_310 Hb_003633_070 Hb_003633_070 Hb_001799_050--Hb_003633_070 Hb_000264_030 Hb_000264_030 Hb_001799_050--Hb_000264_030 Hb_000556_170 Hb_000556_170 Hb_001799_050--Hb_000556_170 Hb_000160_350 Hb_000160_350 Hb_001799_050--Hb_000160_350 Hb_001143_250 Hb_001143_250 Hb_001799_050--Hb_001143_250 Hb_000640_310--Hb_000556_170 Hb_000236_470 Hb_000236_470 Hb_000640_310--Hb_000236_470 Hb_000191_130 Hb_000191_130 Hb_000640_310--Hb_000191_130 Hb_000640_310--Hb_000160_350 Hb_023344_010 Hb_023344_010 Hb_000640_310--Hb_023344_010 Hb_000418_140 Hb_000418_140 Hb_003633_070--Hb_000418_140 Hb_009112_010 Hb_009112_010 Hb_003633_070--Hb_009112_010 Hb_000162_280 Hb_000162_280 Hb_003633_070--Hb_000162_280 Hb_003633_070--Hb_001143_250 Hb_003633_070--Hb_000640_310 Hb_000170_150 Hb_000170_150 Hb_000264_030--Hb_000170_150 Hb_003371_110 Hb_003371_110 Hb_000264_030--Hb_003371_110 Hb_000914_120 Hb_000914_120 Hb_000264_030--Hb_000914_120 Hb_000289_040 Hb_000289_040 Hb_000264_030--Hb_000289_040 Hb_140049_040 Hb_140049_040 Hb_000264_030--Hb_140049_040 Hb_000556_170--Hb_000236_470 Hb_000556_170--Hb_003633_070 Hb_000556_170--Hb_140049_040 Hb_004480_040 Hb_004480_040 Hb_000556_170--Hb_004480_040 Hb_005965_030 Hb_005965_030 Hb_000160_350--Hb_005965_030 Hb_079526_030 Hb_079526_030 Hb_000160_350--Hb_079526_030 Hb_000771_180 Hb_000771_180 Hb_000160_350--Hb_000771_180 Hb_022256_060 Hb_022256_060 Hb_000160_350--Hb_022256_060 Hb_001143_250--Hb_000418_140 Hb_002022_070 Hb_002022_070 Hb_001143_250--Hb_002022_070 Hb_007307_020 Hb_007307_020 Hb_001143_250--Hb_007307_020 Hb_027760_080 Hb_027760_080 Hb_001143_250--Hb_027760_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
266.118 273.636 178.344 104.083 227.36 222.149
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
125.232 129.176 88.1697 189.337 130.485

CAGE analysis