Hb_001799_180

Information

Type -
Description -
Location Contig1799: 176394-181564
Sequence    

Annotation

kegg
ID rcu:RCOM_1608260
description serine/threonine protein kinase, putative (EC:2.7.11.1)
nr
ID XP_012083699.1
description PREDICTED: serine/threonine-protein kinase D6PK [Jatropha curcas]
swissprot
ID Q39183
description Serine/threonine-protein kinase D6PKL2 OS=Arabidopsis thaliana GN=D6PKL2 PE=1 SV=1
trembl
ID A0A067KAL9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14630 PE=4 SV=1
Gene Ontology
ID GO:0004672
description serine threonine-protein kinase d6pk

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17394: 176477-181491
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001799_180 0.0 - - PREDICTED: serine/threonine-protein kinase D6PK [Jatropha curcas]
2 Hb_003504_030 0.0562234967 - - PREDICTED: serine/threonine-protein phosphatase PP1-like isoform X2 [Jatropha curcas]
3 Hb_001538_130 0.0701878862 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001198_100 0.0731264706 - - PREDICTED: serine hydroxymethyltransferase 7-like [Jatropha curcas]
5 Hb_002450_020 0.0744571791 - - PREDICTED: probable transcriptional regulator SLK2 [Jatropha curcas]
6 Hb_006649_050 0.0759023751 - - PREDICTED: zinc finger CCCH domain-containing protein 41 [Jatropha curcas]
7 Hb_065525_040 0.076372769 transcription factor TF Family: ERF ethylene-responsive transcription factor 3-like [Jatropha curcas]
8 Hb_013399_100 0.076798867 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002234_170 0.0769351861 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1 [Jatropha curcas]
10 Hb_006915_030 0.0771422849 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 8 [Jatropha curcas]
11 Hb_015934_040 0.0777098491 - - PREDICTED: protein Hook homolog 3-like [Jatropha curcas]
12 Hb_001369_730 0.079146009 - - F5O11.10, putative isoform 1 [Theobroma cacao]
13 Hb_000107_490 0.0791564654 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
14 Hb_003168_110 0.0807395698 transcription factor TF Family: SWI/SNF-SWI3 PREDICTED: lysine-specific histone demethylase 1 homolog 1 [Jatropha curcas]
15 Hb_003494_020 0.081207819 - - ATP-dependent RNA and DNA helicase, putative [Ricinus communis]
16 Hb_000037_190 0.0816133517 - - PREDICTED: uncharacterized protein LOC105641500 [Jatropha curcas]
17 Hb_000060_090 0.0819378681 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-4a [Jatropha curcas]
18 Hb_000174_270 0.0822315689 - - PREDICTED: type II inositol 1,4,5-trisphosphate 5-phosphatase FRA3 isoform X1 [Jatropha curcas]
19 Hb_003680_120 0.0828406251 - - PREDICTED: E3 ubiquitin-protein ligase UPL7 [Jatropha curcas]
20 Hb_001377_270 0.0829368588 - - hypothetical protein CICLE_v10021159mg [Citrus clementina]

Gene co-expression network

sample Hb_001799_180 Hb_001799_180 Hb_003504_030 Hb_003504_030 Hb_001799_180--Hb_003504_030 Hb_001538_130 Hb_001538_130 Hb_001799_180--Hb_001538_130 Hb_001198_100 Hb_001198_100 Hb_001799_180--Hb_001198_100 Hb_002450_020 Hb_002450_020 Hb_001799_180--Hb_002450_020 Hb_006649_050 Hb_006649_050 Hb_001799_180--Hb_006649_050 Hb_065525_040 Hb_065525_040 Hb_001799_180--Hb_065525_040 Hb_000327_270 Hb_000327_270 Hb_003504_030--Hb_000327_270 Hb_000037_190 Hb_000037_190 Hb_003504_030--Hb_000037_190 Hb_013399_100 Hb_013399_100 Hb_003504_030--Hb_013399_100 Hb_002732_040 Hb_002732_040 Hb_003504_030--Hb_002732_040 Hb_001409_020 Hb_001409_020 Hb_003504_030--Hb_001409_020 Hb_000032_520 Hb_000032_520 Hb_001538_130--Hb_000032_520 Hb_001538_130--Hb_001198_100 Hb_000395_190 Hb_000395_190 Hb_001538_130--Hb_000395_190 Hb_000009_560 Hb_000009_560 Hb_001538_130--Hb_000009_560 Hb_015934_040 Hb_015934_040 Hb_001538_130--Hb_015934_040 Hb_000035_320 Hb_000035_320 Hb_001538_130--Hb_000035_320 Hb_009767_110 Hb_009767_110 Hb_001198_100--Hb_009767_110 Hb_000028_480 Hb_000028_480 Hb_001198_100--Hb_000028_480 Hb_001198_100--Hb_006649_050 Hb_006915_030 Hb_006915_030 Hb_001198_100--Hb_006915_030 Hb_001198_100--Hb_001409_020 Hb_001341_170 Hb_001341_170 Hb_001198_100--Hb_001341_170 Hb_000041_100 Hb_000041_100 Hb_002450_020--Hb_000041_100 Hb_011386_010 Hb_011386_010 Hb_002450_020--Hb_011386_010 Hb_000297_010 Hb_000297_010 Hb_002450_020--Hb_000297_010 Hb_005054_110 Hb_005054_110 Hb_002450_020--Hb_005054_110 Hb_002450_020--Hb_015934_040 Hb_001014_030 Hb_001014_030 Hb_002450_020--Hb_001014_030 Hb_006649_050--Hb_009767_110 Hb_000165_250 Hb_000165_250 Hb_006649_050--Hb_000165_250 Hb_002725_120 Hb_002725_120 Hb_006649_050--Hb_002725_120 Hb_004225_050 Hb_004225_050 Hb_006649_050--Hb_004225_050 Hb_000291_050 Hb_000291_050 Hb_006649_050--Hb_000291_050 Hb_000732_010 Hb_000732_010 Hb_065525_040--Hb_000732_010 Hb_002754_010 Hb_002754_010 Hb_065525_040--Hb_002754_010 Hb_065525_040--Hb_005054_110 Hb_000331_550 Hb_000331_550 Hb_065525_040--Hb_000331_550 Hb_005463_100 Hb_005463_100 Hb_065525_040--Hb_005463_100 Hb_000069_310 Hb_000069_310 Hb_065525_040--Hb_000069_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.8622 21.8743 8.10375 18.5376 14.559 18.7985
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.1142 14.1478 22.7369 11.9003 16.6522

CAGE analysis