Hb_001799_200

Information

Type -
Description -
Location Contig1799: 204321-207055
Sequence    

Annotation

kegg
ID rcu:RCOM_1608280
description leucine carboxyl methyltransferase, putative
nr
ID XP_012083696.1
description PREDICTED: tRNA wybutosine-synthesizing protein 4 [Jatropha curcas]
swissprot
ID Q6P4Z6
description Leucine carboxyl methyltransferase 1 OS=Rattus norvegicus GN=Lcmt1 PE=2 SV=1
trembl
ID A0A067JY98
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14628 PE=4 SV=1
Gene Ontology
ID GO:0008168
description trna wybutosine-synthesizing protein 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17403: 206597-207173
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001799_200 0.0 - - PREDICTED: tRNA wybutosine-synthesizing protein 4 [Jatropha curcas]
2 Hb_006153_030 0.1156687148 - - PREDICTED: probable transaldolase [Jatropha curcas]
3 Hb_099136_010 0.1312553523 - - PREDICTED: cysteine synthase-like isoform X3 [Cucumis sativus]
4 Hb_000735_110 0.1327775918 - - fk506-binding protein, putative [Ricinus communis]
5 Hb_002518_210 0.1426064143 - - PREDICTED: mitochondrial uncoupling protein 2 [Jatropha curcas]
6 Hb_002200_040 0.1442884677 - - PREDICTED: uncharacterized protein LOC105629143 isoform X1 [Jatropha curcas]
7 Hb_004303_040 0.1466834821 - - PREDICTED: fumarate hydratase 1, mitochondrial [Jatropha curcas]
8 Hb_002481_060 0.1469141616 - - PREDICTED: uncharacterized protein LOC105640851 [Jatropha curcas]
9 Hb_009680_020 0.1538601902 - - PREDICTED: 40S ribosomal protein S10 [Jatropha curcas]
10 Hb_000768_210 0.154369983 - - PREDICTED: uncharacterized protein LOC105632522 [Jatropha curcas]
11 Hb_086085_020 0.1576530014 - - Non-imprinted in Prader-Willi/Angelman syndrome region protein isoform 3 [Theobroma cacao]
12 Hb_026745_020 0.1601209506 - - PREDICTED: rhodanese-like domain-containing protein 8, chloroplastic [Jatropha curcas]
13 Hb_002079_050 0.1603498604 - - hypothetical protein B456_004G182300 [Gossypium raimondii]
14 Hb_025098_010 0.1610710253 - - PREDICTED: protoheme IX farnesyltransferase, mitochondrial isoform X2 [Jatropha curcas]
15 Hb_000270_290 0.1627705471 - - 5-formyltetrahydrofolate cyclo-ligase, putative [Ricinus communis]
16 Hb_001250_060 0.1634913215 - - PREDICTED: signal recognition particle receptor subunit beta-like [Jatropha curcas]
17 Hb_002289_080 0.1635721426 - - hypothetical protein POPTR_0016s05590g [Populus trichocarpa]
18 Hb_000136_100 0.1636333157 - - PREDICTED: syntaxin-61 [Jatropha curcas]
19 Hb_008642_030 0.1642876151 - - PREDICTED: UMP-CMP kinase 3 isoform X1 [Jatropha curcas]
20 Hb_002562_110 0.1655227775 - - PREDICTED: CBS domain-containing protein CBSX3, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_001799_200 Hb_001799_200 Hb_006153_030 Hb_006153_030 Hb_001799_200--Hb_006153_030 Hb_099136_010 Hb_099136_010 Hb_001799_200--Hb_099136_010 Hb_000735_110 Hb_000735_110 Hb_001799_200--Hb_000735_110 Hb_002518_210 Hb_002518_210 Hb_001799_200--Hb_002518_210 Hb_002200_040 Hb_002200_040 Hb_001799_200--Hb_002200_040 Hb_004303_040 Hb_004303_040 Hb_001799_200--Hb_004303_040 Hb_007943_200 Hb_007943_200 Hb_006153_030--Hb_007943_200 Hb_005694_020 Hb_005694_020 Hb_006153_030--Hb_005694_020 Hb_000016_060 Hb_000016_060 Hb_006153_030--Hb_000016_060 Hb_002735_050 Hb_002735_050 Hb_006153_030--Hb_002735_050 Hb_008642_030 Hb_008642_030 Hb_006153_030--Hb_008642_030 Hb_000159_130 Hb_000159_130 Hb_099136_010--Hb_000159_130 Hb_008103_050 Hb_008103_050 Hb_099136_010--Hb_008103_050 Hb_055619_010 Hb_055619_010 Hb_099136_010--Hb_055619_010 Hb_001242_140 Hb_001242_140 Hb_099136_010--Hb_001242_140 Hb_007534_050 Hb_007534_050 Hb_099136_010--Hb_007534_050 Hb_000141_080 Hb_000141_080 Hb_000735_110--Hb_000141_080 Hb_003929_270 Hb_003929_270 Hb_000735_110--Hb_003929_270 Hb_000392_190 Hb_000392_190 Hb_000735_110--Hb_000392_190 Hb_001250_060 Hb_001250_060 Hb_000735_110--Hb_001250_060 Hb_086085_020 Hb_086085_020 Hb_000735_110--Hb_086085_020 Hb_002053_140 Hb_002053_140 Hb_000735_110--Hb_002053_140 Hb_000768_210 Hb_000768_210 Hb_002518_210--Hb_000768_210 Hb_001189_070 Hb_001189_070 Hb_002518_210--Hb_001189_070 Hb_008841_020 Hb_008841_020 Hb_002518_210--Hb_008841_020 Hb_003633_030 Hb_003633_030 Hb_002518_210--Hb_003633_030 Hb_002518_210--Hb_000141_080 Hb_001366_370 Hb_001366_370 Hb_002518_210--Hb_001366_370 Hb_002079_050 Hb_002079_050 Hb_002200_040--Hb_002079_050 Hb_000210_240 Hb_000210_240 Hb_002200_040--Hb_000210_240 Hb_006274_040 Hb_006274_040 Hb_002200_040--Hb_006274_040 Hb_003606_060 Hb_003606_060 Hb_002200_040--Hb_003606_060 Hb_002200_040--Hb_004303_040 Hb_008447_030 Hb_008447_030 Hb_002200_040--Hb_008447_030 Hb_026745_020 Hb_026745_020 Hb_004303_040--Hb_026745_020 Hb_002481_060 Hb_002481_060 Hb_004303_040--Hb_002481_060 Hb_004709_020 Hb_004709_020 Hb_004303_040--Hb_004709_020 Hb_000004_020 Hb_000004_020 Hb_004303_040--Hb_000004_020 Hb_005701_060 Hb_005701_060 Hb_004303_040--Hb_005701_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.587207 0.0534933 0.885048 2.39631 0.529413 1.96806
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.93148 1.57111 0.758544 1.05951 1.78892

CAGE analysis