Hb_001799_210

Information

Type -
Description -
Location Contig1799: 214655-219684
Sequence    

Annotation

kegg
ID cmo:103498808
description COP9 signalosome complex subunit 7
nr
ID XP_012083693.1
description PREDICTED: COP9 signalosome complex subunit 7 isoform X1 [Jatropha curcas]
swissprot
ID Q94JU3
description COP9 signalosome complex subunit 7 OS=Arabidopsis thaliana GN=CSN7 PE=1 SV=1
trembl
ID A0A067JY12
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14627 PE=4 SV=1
Gene Ontology
ID GO:0005515
description cop9 signalosome complex subunit 7 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17404: 214658-219660 , PASA_asmbl_17405: 218709-219660
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001799_210 0.0 - - PREDICTED: COP9 signalosome complex subunit 7 isoform X1 [Jatropha curcas]
2 Hb_000465_160 0.0336639994 - - PREDICTED: uncharacterized protein LOC105632297 [Jatropha curcas]
3 Hb_001009_270 0.0585575108 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 6 homolog [Jatropha curcas]
4 Hb_000003_250 0.0650979334 - - glycerol-3-phosphate dehydrogenase, putative [Ricinus communis]
5 Hb_003177_030 0.0688066886 - - PREDICTED: uncharacterized protein LOC105635357 [Jatropha curcas]
6 Hb_032208_090 0.0704759769 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit [Jatropha curcas]
7 Hb_011344_210 0.072716332 - - PREDICTED: probable calcium-binding protein CML13 [Jatropha curcas]
8 Hb_001300_150 0.0757574776 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 3 [Jatropha curcas]
9 Hb_000175_460 0.0773326302 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
10 Hb_002830_030 0.0775656869 - - PREDICTED: CDK5RAP3-like protein [Jatropha curcas]
11 Hb_001159_130 0.0776897118 - - PREDICTED: protein cornichon homolog 4 [Jatropha curcas]
12 Hb_004696_080 0.0798047844 - - PREDICTED: uncharacterized protein At1g01500-like [Populus euphratica]
13 Hb_000580_180 0.0810227731 - - conserved hypothetical protein [Ricinus communis]
14 Hb_008725_260 0.0830531947 - - PREDICTED: uncharacterized protein LOC105642597 [Jatropha curcas]
15 Hb_005144_160 0.0834310724 - - PREDICTED: uncharacterized protein LOC105628018 isoform X1 [Jatropha curcas]
16 Hb_024439_010 0.0836233153 - - PREDICTED: LAG1 longevity assurance homolog 2 [Jatropha curcas]
17 Hb_000703_350 0.0842648209 - - PREDICTED: WD repeat-containing protein 26-like [Jatropha curcas]
18 Hb_005779_060 0.0844533353 - - PREDICTED: uncharacterized protein LOC105643212 isoform X2 [Jatropha curcas]
19 Hb_000749_220 0.0844978954 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X1 [Jatropha curcas]
20 Hb_004907_080 0.0847279244 - - zinc finger protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001799_210 Hb_001799_210 Hb_000465_160 Hb_000465_160 Hb_001799_210--Hb_000465_160 Hb_001009_270 Hb_001009_270 Hb_001799_210--Hb_001009_270 Hb_000003_250 Hb_000003_250 Hb_001799_210--Hb_000003_250 Hb_003177_030 Hb_003177_030 Hb_001799_210--Hb_003177_030 Hb_032208_090 Hb_032208_090 Hb_001799_210--Hb_032208_090 Hb_011344_210 Hb_011344_210 Hb_001799_210--Hb_011344_210 Hb_001300_150 Hb_001300_150 Hb_000465_160--Hb_001300_150 Hb_000465_160--Hb_001009_270 Hb_000260_030 Hb_000260_030 Hb_000465_160--Hb_000260_030 Hb_000465_160--Hb_003177_030 Hb_004109_170 Hb_004109_170 Hb_000465_160--Hb_004109_170 Hb_004907_080 Hb_004907_080 Hb_001009_270--Hb_004907_080 Hb_001009_270--Hb_032208_090 Hb_001009_270--Hb_003177_030 Hb_000777_040 Hb_000777_040 Hb_001009_270--Hb_000777_040 Hb_001014_030 Hb_001014_030 Hb_000003_250--Hb_001014_030 Hb_005463_100 Hb_005463_100 Hb_000003_250--Hb_005463_100 Hb_002046_180 Hb_002046_180 Hb_000003_250--Hb_002046_180 Hb_010128_080 Hb_010128_080 Hb_000003_250--Hb_010128_080 Hb_000876_070 Hb_000876_070 Hb_000003_250--Hb_000876_070 Hb_000749_220 Hb_000749_220 Hb_003177_030--Hb_000749_220 Hb_005144_160 Hb_005144_160 Hb_003177_030--Hb_005144_160 Hb_000676_250 Hb_000676_250 Hb_003177_030--Hb_000676_250 Hb_001159_130 Hb_001159_130 Hb_003177_030--Hb_001159_130 Hb_000019_030 Hb_000019_030 Hb_003177_030--Hb_000019_030 Hb_000579_140 Hb_000579_140 Hb_032208_090--Hb_000579_140 Hb_000451_010 Hb_000451_010 Hb_032208_090--Hb_000451_010 Hb_003092_040 Hb_003092_040 Hb_032208_090--Hb_003092_040 Hb_032208_090--Hb_011344_210 Hb_000618_040 Hb_000618_040 Hb_032208_090--Hb_000618_040 Hb_000580_180 Hb_000580_180 Hb_011344_210--Hb_000580_180 Hb_011344_210--Hb_001009_270 Hb_000815_320 Hb_000815_320 Hb_011344_210--Hb_000815_320 Hb_005846_040 Hb_005846_040 Hb_011344_210--Hb_005846_040 Hb_003126_050 Hb_003126_050 Hb_011344_210--Hb_003126_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.6675 18.5515 21.9349 28.257 24.6849 24.8828
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.6047 33.1236 45.958 17.8325 14.253

CAGE analysis