Hb_001804_020

Information

Type -
Description -
Location Contig1804: 37751-38041
Sequence    

Annotation

kegg
ID pop:POPTR_0006s09110g
description POPTRDRAFT_560811; hypothetical protein
nr
ID XP_002308177.1
description hypothetical protein POPTR_0006s09110g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9HC38
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s09110g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17445: 37741-38483
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001804_020 0.0 - - hypothetical protein POPTR_0006s09110g [Populus trichocarpa]
2 Hb_031822_020 0.0867759707 - - PREDICTED: uncharacterized protein LOC104613080 [Nelumbo nucifera]
3 Hb_007441_320 0.0972727924 - - PREDICTED: putative invertase inhibitor [Jatropha curcas]
4 Hb_003607_040 0.0981306622 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
5 Hb_002701_200 0.0990673437 - - PREDICTED: COBRA-like protein 4 [Jatropha curcas]
6 Hb_103942_020 0.1031562853 - - unknown [Zea mays]
7 Hb_002215_020 0.1045665585 - - hypothetical protein JCGZ_13728 [Jatropha curcas]
8 Hb_000331_660 0.1082665022 - - PREDICTED: vignain [Jatropha curcas]
9 Hb_007472_060 0.1120420765 - - PREDICTED: ABC transporter G family member 14-like isoform X1 [Jatropha curcas]
10 Hb_011689_090 0.1130065603 - - PREDICTED: uncharacterized protein LOC105631865 [Jatropha curcas]
11 Hb_002853_010 0.1139482671 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000479_100 0.1162355697 - - Alpha-1,4 glucan phosphorylase L-2 isozyme, chloroplastic/amyloplastic [Gossypium arboreum]
13 Hb_001454_030 0.1175114399 - - PREDICTED: flowering-promoting factor 1-like protein 3 [Jatropha curcas]
14 Hb_116679_010 0.12045577 - - PREDICTED: transcription factor bHLH110 isoform X2 [Vitis vinifera]
15 Hb_106677_010 0.1218645638 - - 3'-N-debenzoyl-2'-deoxytaxol N-benzoyltransferase, putative [Ricinus communis]
16 Hb_000296_030 0.1246942671 - - PREDICTED: uncharacterized protein LOC105636578 [Jatropha curcas]
17 Hb_000027_020 0.1249512924 - - Nonspecific lipid-transfer protein, putative [Ricinus communis]
18 Hb_001597_040 0.126314526 - - -
19 Hb_029508_050 0.126329827 - - PREDICTED: mechanosensitive ion channel protein 10-like isoform X2 [Musa acuminata subsp. malaccensis]
20 Hb_001634_070 0.1294166116 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001804_020 Hb_001804_020 Hb_031822_020 Hb_031822_020 Hb_001804_020--Hb_031822_020 Hb_007441_320 Hb_007441_320 Hb_001804_020--Hb_007441_320 Hb_003607_040 Hb_003607_040 Hb_001804_020--Hb_003607_040 Hb_002701_200 Hb_002701_200 Hb_001804_020--Hb_002701_200 Hb_103942_020 Hb_103942_020 Hb_001804_020--Hb_103942_020 Hb_002215_020 Hb_002215_020 Hb_001804_020--Hb_002215_020 Hb_031822_020--Hb_002701_200 Hb_012753_140 Hb_012753_140 Hb_031822_020--Hb_012753_140 Hb_031822_020--Hb_007441_320 Hb_120496_010 Hb_120496_010 Hb_031822_020--Hb_120496_010 Hb_000224_070 Hb_000224_070 Hb_031822_020--Hb_000224_070 Hb_007441_320--Hb_103942_020 Hb_001454_030 Hb_001454_030 Hb_007441_320--Hb_001454_030 Hb_007441_320--Hb_003607_040 Hb_000527_090 Hb_000527_090 Hb_007441_320--Hb_000527_090 Hb_007441_320--Hb_120496_010 Hb_006452_080 Hb_006452_080 Hb_007441_320--Hb_006452_080 Hb_003607_040--Hb_002215_020 Hb_116679_010 Hb_116679_010 Hb_003607_040--Hb_116679_010 Hb_000012_340 Hb_000012_340 Hb_003607_040--Hb_000012_340 Hb_000358_070 Hb_000358_070 Hb_003607_040--Hb_000358_070 Hb_000816_170 Hb_000816_170 Hb_003607_040--Hb_000816_170 Hb_029508_050 Hb_029508_050 Hb_003607_040--Hb_029508_050 Hb_000628_080 Hb_000628_080 Hb_002701_200--Hb_000628_080 Hb_000905_130 Hb_000905_130 Hb_002701_200--Hb_000905_130 Hb_000270_590 Hb_000270_590 Hb_002701_200--Hb_000270_590 Hb_001247_050 Hb_001247_050 Hb_002701_200--Hb_001247_050 Hb_000296_030 Hb_000296_030 Hb_002701_200--Hb_000296_030 Hb_103942_020--Hb_001454_030 Hb_103942_020--Hb_000628_080 Hb_103942_020--Hb_003607_040 Hb_103942_020--Hb_000012_340 Hb_002186_190 Hb_002186_190 Hb_103942_020--Hb_002186_190 Hb_002215_020--Hb_000012_340 Hb_002215_020--Hb_103942_020 Hb_002215_020--Hb_002186_190 Hb_002215_020--Hb_001454_030 Hb_002215_020--Hb_000816_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.36787 29.6907 8.81291 1102.79 1.15146 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.02365 7.01923 0.892621 13.2167 8.22353

CAGE analysis