Hb_001809_040

Information

Type -
Description -
Location Contig1809: 56400-57547
Sequence    

Annotation

kegg
ID tcc:TCM_028455
description Gag protease polyprotein, putative
nr
ID XP_012077882.1
description PREDICTED: uncharacterized protein LOC105638660 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A061G9Q7
description Gag protease polyprotein, putative OS=Theobroma cacao GN=TCM_028455 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001809_040 0.0 - - PREDICTED: uncharacterized protein LOC105638660 [Jatropha curcas]
2 Hb_183366_010 0.0134874629 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
3 Hb_000599_060 0.0171097152 - - PREDICTED: legumin A-like [Jatropha curcas]
4 Hb_004532_010 0.0447788142 - - PREDICTED: uncharacterized protein LOC105800934 [Gossypium raimondii]
5 Hb_163115_010 0.0555809865 - - -
6 Hb_027014_010 0.0952115738 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
7 Hb_004162_300 0.103069283 - - monovalent cation:proton antiporter, putative [Ricinus communis]
8 Hb_012193_020 0.1226299029 - - PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
9 Hb_034050_010 0.169562914 - - PREDICTED: uncharacterized protein LOC103498182 [Cucumis melo]
10 Hb_121031_010 0.1800494358 - - PREDICTED: uncharacterized protein LOC104104926 [Nicotiana tomentosiformis]
11 Hb_000875_100 0.2403061888 - - hypothetical protein JCGZ_04800 [Jatropha curcas]
12 Hb_000284_070 0.2720627857 - - hypothetical protein JCGZ_00222 [Jatropha curcas]
13 Hb_007192_110 0.3064268187 - - -
14 Hb_037271_010 0.3069675179 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
15 Hb_046707_010 0.3209193062 - - PREDICTED: uncharacterized protein LOC104887079 [Beta vulgaris subsp. vulgaris]
16 Hb_007761_050 0.3226620433 - - calcineurin-like protein [Hevea brasiliensis]
17 Hb_124480_010 0.3392288918 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
18 Hb_011401_010 0.3417402836 - - PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]
19 Hb_003304_040 0.3496902837 - - hypothetical protein CICLE_v10003343mg, partial [Citrus clementina]
20 Hb_002231_050 0.3586659666 - - -

Gene co-expression network

sample Hb_001809_040 Hb_001809_040 Hb_183366_010 Hb_183366_010 Hb_001809_040--Hb_183366_010 Hb_000599_060 Hb_000599_060 Hb_001809_040--Hb_000599_060 Hb_004532_010 Hb_004532_010 Hb_001809_040--Hb_004532_010 Hb_163115_010 Hb_163115_010 Hb_001809_040--Hb_163115_010 Hb_027014_010 Hb_027014_010 Hb_001809_040--Hb_027014_010 Hb_004162_300 Hb_004162_300 Hb_001809_040--Hb_004162_300 Hb_183366_010--Hb_000599_060 Hb_183366_010--Hb_163115_010 Hb_183366_010--Hb_004532_010 Hb_183366_010--Hb_027014_010 Hb_183366_010--Hb_004162_300 Hb_000599_060--Hb_004532_010 Hb_000599_060--Hb_163115_010 Hb_012193_020 Hb_012193_020 Hb_000599_060--Hb_012193_020 Hb_000599_060--Hb_027014_010 Hb_004532_010--Hb_012193_020 Hb_004532_010--Hb_163115_010 Hb_004532_010--Hb_027014_010 Hb_163115_010--Hb_027014_010 Hb_163115_010--Hb_004162_300 Hb_027014_010--Hb_004162_300 Hb_034050_010 Hb_034050_010 Hb_027014_010--Hb_034050_010 Hb_121031_010 Hb_121031_010 Hb_027014_010--Hb_121031_010 Hb_004162_300--Hb_034050_010 Hb_004162_300--Hb_121031_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.0247152
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0511218 0 0 0 0

CAGE analysis