Hb_001810_040

Information

Type -
Description -
Location Contig1810: 37268-39581
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17559: 35068-38130
cDNA
(Sanger)
(ID:Location)		 046_D22.ab1: 35650-38129

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001810_040 0.0 - - -
2 Hb_023768_010 0.1320487759 - - -
3 Hb_002320_050 0.1453397817 - - clathrin assembly family protein [Populus trichocarpa]
4 Hb_000470_060 0.155784414 - - PREDICTED: abietadienol/abietadienal oxidase [Jatropha curcas]
5 Hb_004308_020 0.1562839605 - - hypothetical protein POPTR_0005s15590g [Populus trichocarpa]
6 Hb_002277_020 0.1620360779 - - Uncharacterized protein TCM_002409 [Theobroma cacao]
7 Hb_000429_080 0.1691290615 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002053_020 0.170440475 - - PREDICTED: MATE efflux family protein DTX1 [Jatropha curcas]
9 Hb_006187_020 0.171728631 - - PREDICTED: WAT1-related protein At5g07050-like [Populus euphratica]
10 Hb_000579_210 0.1720899171 - - PREDICTED: omega-hydroxypalmitate O-feruloyl transferase [Jatropha curcas]
11 Hb_002640_030 0.1728067286 - - hypothetical protein POPTR_0014s05270g [Populus trichocarpa]
12 Hb_029508_040 0.1800984885 - - PREDICTED: mechanosensitive ion channel protein 8-like [Jatropha curcas]
13 Hb_000186_090 0.1801040164 - - ACC oxidase 1 [Hevea brasiliensis]
14 Hb_000188_140 0.1803567916 - - PREDICTED: germin-like protein subfamily 3 member 2 [Jatropha curcas]
15 Hb_003952_080 0.1819909036 - - zinc finger protein, putative [Ricinus communis]
16 Hb_000710_130 0.1829135287 - - metal ion binding protein, putative [Ricinus communis]
17 Hb_025194_070 0.1853161696 - - PREDICTED: ACT domain-containing protein ACR4-like [Jatropha curcas]
18 Hb_005227_050 0.1857742266 - - conserved hypothetical protein [Ricinus communis]
19 Hb_045786_010 0.1863135973 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
20 Hb_180293_010 0.187276874 - - hypothetical protein POPTR_0008s19020g [Populus trichocarpa]

Gene co-expression network

sample Hb_001810_040 Hb_001810_040 Hb_023768_010 Hb_023768_010 Hb_001810_040--Hb_023768_010 Hb_002320_050 Hb_002320_050 Hb_001810_040--Hb_002320_050 Hb_000470_060 Hb_000470_060 Hb_001810_040--Hb_000470_060 Hb_004308_020 Hb_004308_020 Hb_001810_040--Hb_004308_020 Hb_002277_020 Hb_002277_020 Hb_001810_040--Hb_002277_020 Hb_000429_080 Hb_000429_080 Hb_001810_040--Hb_000429_080 Hb_002053_020 Hb_002053_020 Hb_023768_010--Hb_002053_020 Hb_025194_070 Hb_025194_070 Hb_023768_010--Hb_025194_070 Hb_002640_030 Hb_002640_030 Hb_023768_010--Hb_002640_030 Hb_000922_050 Hb_000922_050 Hb_023768_010--Hb_000922_050 Hb_003427_070 Hb_003427_070 Hb_023768_010--Hb_003427_070 Hb_029508_040 Hb_029508_040 Hb_002320_050--Hb_029508_040 Hb_002925_040 Hb_002925_040 Hb_002320_050--Hb_002925_040 Hb_000186_090 Hb_000186_090 Hb_002320_050--Hb_000186_090 Hb_005356_050 Hb_005356_050 Hb_002320_050--Hb_005356_050 Hb_074100_010 Hb_074100_010 Hb_002320_050--Hb_074100_010 Hb_000188_140 Hb_000188_140 Hb_000470_060--Hb_000188_140 Hb_180293_010 Hb_180293_010 Hb_000470_060--Hb_180293_010 Hb_000470_060--Hb_002053_020 Hb_000152_630 Hb_000152_630 Hb_000470_060--Hb_000152_630 Hb_000206_270 Hb_000206_270 Hb_000470_060--Hb_000206_270 Hb_000230_220 Hb_000230_220 Hb_000470_060--Hb_000230_220 Hb_000352_240 Hb_000352_240 Hb_004308_020--Hb_000352_240 Hb_001431_100 Hb_001431_100 Hb_004308_020--Hb_001431_100 Hb_006469_110 Hb_006469_110 Hb_004308_020--Hb_006469_110 Hb_002309_030 Hb_002309_030 Hb_004308_020--Hb_002309_030 Hb_001369_500 Hb_001369_500 Hb_004308_020--Hb_001369_500 Hb_002277_020--Hb_029508_040 Hb_002277_020--Hb_000186_090 Hb_000710_130 Hb_000710_130 Hb_002277_020--Hb_000710_130 Hb_000027_010 Hb_000027_010 Hb_002277_020--Hb_000027_010 Hb_002277_020--Hb_074100_010 Hb_002894_020 Hb_002894_020 Hb_002277_020--Hb_002894_020 Hb_001584_250 Hb_001584_250 Hb_000429_080--Hb_001584_250 Hb_032299_020 Hb_032299_020 Hb_000429_080--Hb_032299_020 Hb_009851_120 Hb_009851_120 Hb_000429_080--Hb_009851_120 Hb_006187_020 Hb_006187_020 Hb_000429_080--Hb_006187_020 Hb_001502_010 Hb_001502_010 Hb_000429_080--Hb_001502_010 Hb_000999_060 Hb_000999_060 Hb_000429_080--Hb_000999_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.13022 19.9402 15.8676 130.436 0.780871 0.595477
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.58495 4.45171 0.643475 0.283441 3.51631

CAGE analysis