Hb_001810_050

Information

Type -
Description -
Location Contig1810: 40220-41838
Sequence    

Annotation

kegg
ID rcu:RCOM_1037480
description hypothetical protein
nr
ID XP_002513975.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RJQ6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1037480 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17560: 39680-41061
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001810_050 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_004204_040 0.1015097475 - - -
3 Hb_012640_010 0.1106755982 - - -
4 Hb_052802_010 0.1203225726 - - kinase, putative [Ricinus communis]
5 Hb_071079_060 0.1364103502 - - PREDICTED: uncharacterized protein LOC105113464 [Populus euphratica]
6 Hb_002894_020 0.1517559785 - - PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like [Jatropha curcas]
7 Hb_006052_080 0.155272865 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH140-like [Populus euphratica]
8 Hb_000445_480 0.1583661906 - - cytochrome P450, putative [Ricinus communis]
9 Hb_000320_250 0.1588447898 - - hypothetical protein POPTR_0021s00440g [Populus trichocarpa]
10 Hb_103931_010 0.1596078771 - - -
11 Hb_000027_010 0.1607047609 - - -
12 Hb_002277_020 0.1614849891 - - Uncharacterized protein TCM_002409 [Theobroma cacao]
13 Hb_002025_190 0.1636945186 - - PREDICTED: transcription factor bHLH111 [Jatropha curcas]
14 Hb_045786_010 0.1658256076 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
15 Hb_000343_170 0.1668072653 - - PREDICTED: probable sulfate transporter 3.4 [Jatropha curcas]
16 Hb_000628_100 0.1701625664 - - hypothetical protein MTR_1g019660 [Medicago truncatula]
17 Hb_000363_100 0.1739673468 - - -
18 Hb_033153_030 0.1741438997 - - PREDICTED: uncharacterized protein LOC105650145 [Jatropha curcas]
19 Hb_000579_210 0.1742902788 - - PREDICTED: omega-hydroxypalmitate O-feruloyl transferase [Jatropha curcas]
20 Hb_003777_100 0.1746627255 - - Auxin-induced protein 5NG4, putative [Ricinus communis]

Gene co-expression network

sample Hb_001810_050 Hb_001810_050 Hb_004204_040 Hb_004204_040 Hb_001810_050--Hb_004204_040 Hb_012640_010 Hb_012640_010 Hb_001810_050--Hb_012640_010 Hb_052802_010 Hb_052802_010 Hb_001810_050--Hb_052802_010 Hb_071079_060 Hb_071079_060 Hb_001810_050--Hb_071079_060 Hb_002894_020 Hb_002894_020 Hb_001810_050--Hb_002894_020 Hb_006052_080 Hb_006052_080 Hb_001810_050--Hb_006052_080 Hb_002659_110 Hb_002659_110 Hb_004204_040--Hb_002659_110 Hb_004204_040--Hb_071079_060 Hb_010926_020 Hb_010926_020 Hb_004204_040--Hb_010926_020 Hb_004204_040--Hb_052802_010 Hb_057018_010 Hb_057018_010 Hb_004204_040--Hb_057018_010 Hb_012640_010--Hb_071079_060 Hb_178343_010 Hb_178343_010 Hb_012640_010--Hb_178343_010 Hb_000343_170 Hb_000343_170 Hb_012640_010--Hb_000343_170 Hb_003906_040 Hb_003906_040 Hb_012640_010--Hb_003906_040 Hb_012640_010--Hb_006052_080 Hb_007545_200 Hb_007545_200 Hb_052802_010--Hb_007545_200 Hb_052802_010--Hb_012640_010 Hb_119600_020 Hb_119600_020 Hb_052802_010--Hb_119600_020 Hb_052802_010--Hb_071079_060 Hb_130739_010 Hb_130739_010 Hb_071079_060--Hb_130739_010 Hb_020805_160 Hb_020805_160 Hb_071079_060--Hb_020805_160 Hb_071079_060--Hb_002659_110 Hb_000445_480 Hb_000445_480 Hb_002894_020--Hb_000445_480 Hb_000224_020 Hb_000224_020 Hb_002894_020--Hb_000224_020 Hb_033153_030 Hb_033153_030 Hb_002894_020--Hb_033153_030 Hb_007426_100 Hb_007426_100 Hb_002894_020--Hb_007426_100 Hb_002874_100 Hb_002874_100 Hb_002894_020--Hb_002874_100 Hb_000363_100 Hb_000363_100 Hb_002894_020--Hb_000363_100 Hb_000035_510 Hb_000035_510 Hb_006052_080--Hb_000035_510 Hb_000027_010 Hb_000027_010 Hb_006052_080--Hb_000027_010 Hb_005463_120 Hb_005463_120 Hb_006052_080--Hb_005463_120 Hb_008727_090 Hb_008727_090 Hb_006052_080--Hb_008727_090 Hb_181191_010 Hb_181191_010 Hb_006052_080--Hb_181191_010 Hb_000203_120 Hb_000203_120 Hb_006052_080--Hb_000203_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.203217 0.620947 0.249675 4.08361 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0833583 0

CAGE analysis