Hb_001811_020

Information

Type -
Description -
Location Contig1811: 12852-16579
Sequence    

Annotation

kegg
ID rcu:RCOM_0886640
description hypothetical protein
nr
ID XP_002522685.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S9L6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0886640 PE=4 SV=1
Gene Ontology
ID GO:0005634
description conserved hypothetical protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17564: 12975-15317 , PASA_asmbl_17565: 13001-16421
cDNA
(Sanger)
(ID:Location)		 024_N07.ab1: 13081-15310 , 046_C03.ab1: 12980-15314

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001811_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000099_200 0.0633364121 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000029_020 0.0638455114 - - Vesicle-associated membrane protein, putative [Ricinus communis]
4 Hb_000205_270 0.0791081611 - - PREDICTED: uncharacterized protein LOC105632722 isoform X1 [Jatropha curcas]
5 Hb_000115_330 0.0800805989 - - altered response to gravity (arg1), plant, putative [Ricinus communis]
6 Hb_001258_080 0.0802523811 - - PREDICTED: uncharacterized protein LOC105639921 [Jatropha curcas]
7 Hb_183086_060 0.0870083728 desease resistance Gene Name: AAA PREDICTED: ATPase family AAA domain-containing protein 1-B [Jatropha curcas]
8 Hb_000046_110 0.0875035709 - - PREDICTED: 54S ribosomal protein L39, mitochondrial [Jatropha curcas]
9 Hb_000200_050 0.087569314 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
10 Hb_001718_100 0.0902297828 - - PREDICTED: casein kinase II subunit beta-like isoform X5 [Jatropha curcas]
11 Hb_001158_140 0.0911665755 - - glutamate-1-semialdehyde 2,1-aminomutase, putative [Ricinus communis]
12 Hb_016065_010 0.0917250695 - - PREDICTED: pentatricopeptide repeat-containing protein At5g08305 [Jatropha curcas]
13 Hb_009486_130 0.0926140477 - - hypothetical protein CISIN_1g023046mg [Citrus sinensis]
14 Hb_002716_070 0.0934318721 - - PREDICTED: protein ABIL2 [Jatropha curcas]
15 Hb_009666_040 0.09346596 - - glutathione transferase, putative [Ricinus communis]
16 Hb_000230_540 0.0935883606 - - PREDICTED: glycine-rich RNA-binding protein 3, mitochondrial [Sesamum indicum]
17 Hb_131864_040 0.0944226022 - - PREDICTED: uncharacterized protein LOC105649406 isoform X1 [Jatropha curcas]
18 Hb_006693_030 0.094579351 - - PREDICTED: ribonuclease H2 subunit A [Jatropha curcas]
19 Hb_005488_010 0.0962356044 - - conserved hypothetical protein [Ricinus communis]
20 Hb_004109_190 0.096619834 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 25-like isoform X2 [Populus euphratica]

Gene co-expression network

sample Hb_001811_020 Hb_001811_020 Hb_000099_200 Hb_000099_200 Hb_001811_020--Hb_000099_200 Hb_000029_020 Hb_000029_020 Hb_001811_020--Hb_000029_020 Hb_000205_270 Hb_000205_270 Hb_001811_020--Hb_000205_270 Hb_000115_330 Hb_000115_330 Hb_001811_020--Hb_000115_330 Hb_001258_080 Hb_001258_080 Hb_001811_020--Hb_001258_080 Hb_183086_060 Hb_183086_060 Hb_001811_020--Hb_183086_060 Hb_000099_200--Hb_000029_020 Hb_000186_240 Hb_000186_240 Hb_000099_200--Hb_000186_240 Hb_010638_020 Hb_010638_020 Hb_000099_200--Hb_010638_020 Hb_006693_030 Hb_006693_030 Hb_000099_200--Hb_006693_030 Hb_000099_200--Hb_000115_330 Hb_000029_020--Hb_183086_060 Hb_000602_010 Hb_000602_010 Hb_000029_020--Hb_000602_010 Hb_002687_110 Hb_002687_110 Hb_000029_020--Hb_002687_110 Hb_000029_020--Hb_000115_330 Hb_004109_190 Hb_004109_190 Hb_000029_020--Hb_004109_190 Hb_016065_010 Hb_016065_010 Hb_000205_270--Hb_016065_010 Hb_000009_160 Hb_000009_160 Hb_000205_270--Hb_000009_160 Hb_001109_020 Hb_001109_020 Hb_000205_270--Hb_001109_020 Hb_005488_010 Hb_005488_010 Hb_000205_270--Hb_005488_010 Hb_000329_310 Hb_000329_310 Hb_000205_270--Hb_000329_310 Hb_000444_050 Hb_000444_050 Hb_000205_270--Hb_000444_050 Hb_009486_130 Hb_009486_130 Hb_000115_330--Hb_009486_130 Hb_002477_070 Hb_002477_070 Hb_000115_330--Hb_002477_070 Hb_000115_330--Hb_000205_270 Hb_000115_330--Hb_016065_010 Hb_002539_090 Hb_002539_090 Hb_001258_080--Hb_002539_090 Hb_000046_110 Hb_000046_110 Hb_001258_080--Hb_000046_110 Hb_001718_100 Hb_001718_100 Hb_001258_080--Hb_001718_100 Hb_001173_040 Hb_001173_040 Hb_001258_080--Hb_001173_040 Hb_001829_060 Hb_001829_060 Hb_001258_080--Hb_001829_060 Hb_183086_060--Hb_004109_190 Hb_004724_420 Hb_004724_420 Hb_183086_060--Hb_004724_420 Hb_183086_060--Hb_002687_110 Hb_001248_130 Hb_001248_130 Hb_183086_060--Hb_001248_130 Hb_183086_060--Hb_000205_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.3185 2.91549 2.87901 7.83547 17.9828 24.2962
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.8076 25.5078 31.0774 9.82679 4.90923

CAGE analysis