Hb_001811_030

Information

Type -
Description -
Location Contig1811: 16515-21136
Sequence    

Annotation

kegg
ID rcu:RCOM_0449350
description Beta-ureidopropionase, putative (EC:3.5.1.6)
nr
ID XP_002532764.1
description Beta-ureidopropionase, putative [Ricinus communis]
swissprot
ID Q8H183
description Beta-ureidopropionase OS=Arabidopsis thaliana GN=PYD3 PE=1 SV=1
trembl
ID B9T3E5
description Beta-ureidopropionase, putative OS=Ricinus communis GN=RCOM_0449350 PE=4 SV=1
Gene Ontology
ID GO:0016810
description beta-ureidopropionase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17566: 18016-21194
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001811_030 0.0 - - Beta-ureidopropionase, putative [Ricinus communis]
2 Hb_001014_040 0.0792849619 - - PREDICTED: uncharacterized protein LOC105647308 [Jatropha curcas]
3 Hb_004079_030 0.0851115611 - - PREDICTED: uncharacterized protein LOC105637701 isoform X2 [Jatropha curcas]
4 Hb_000922_390 0.0883170298 - - PREDICTED: uncharacterized protein LOC105640364 [Jatropha curcas]
5 Hb_001507_040 0.0924089883 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000445_040 0.0947237093 - - PREDICTED: NAD kinase 2, chloroplastic [Jatropha curcas]
7 Hb_008616_070 0.102052825 - - PREDICTED: trafficking protein particle complex subunit 8 isoform X1 [Jatropha curcas]
8 Hb_002005_020 0.1021328897 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001897_040 0.1022322761 - - 26S proteasome non-atpase regulatory subunit, putative [Ricinus communis]
10 Hb_000138_110 0.1024996939 - - PREDICTED: probable protein phosphatase 2C 68 [Jatropha curcas]
11 Hb_000108_070 0.1025135968 - - alpha-tubulin 1 [Hevea brasiliensis]
12 Hb_001454_190 0.1029101008 - - PREDICTED: pentatricopeptide repeat-containing protein At3g06920 [Jatropha curcas]
13 Hb_002027_040 0.1030909219 - - synapse-associated protein, putative [Ricinus communis]
14 Hb_172932_010 0.1043527608 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_000340_390 0.1079247699 - - PREDICTED: autophagy-related protein 18g [Jatropha curcas]
16 Hb_000260_570 0.1088621817 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
17 Hb_031862_110 0.1089346594 - - calcium-dependent protein kinase [Hevea brasiliensis]
18 Hb_012325_020 0.1089575135 - - PREDICTED: ATPase family AAA domain-containing protein At1g05910 isoform X1 [Jatropha curcas]
19 Hb_020805_130 0.1110416902 - - protein phosphatase 2c, putative [Ricinus communis]
20 Hb_000482_090 0.1110456181 - - PREDICTED: uncharacterized protein LOC105638145 [Jatropha curcas]

Gene co-expression network

sample Hb_001811_030 Hb_001811_030 Hb_001014_040 Hb_001014_040 Hb_001811_030--Hb_001014_040 Hb_004079_030 Hb_004079_030 Hb_001811_030--Hb_004079_030 Hb_000922_390 Hb_000922_390 Hb_001811_030--Hb_000922_390 Hb_001507_040 Hb_001507_040 Hb_001811_030--Hb_001507_040 Hb_000445_040 Hb_000445_040 Hb_001811_030--Hb_000445_040 Hb_008616_070 Hb_008616_070 Hb_001811_030--Hb_008616_070 Hb_000108_070 Hb_000108_070 Hb_001014_040--Hb_000108_070 Hb_031862_110 Hb_031862_110 Hb_001014_040--Hb_031862_110 Hb_002005_020 Hb_002005_020 Hb_001014_040--Hb_002005_020 Hb_002374_100 Hb_002374_100 Hb_001014_040--Hb_002374_100 Hb_000130_050 Hb_000130_050 Hb_001014_040--Hb_000130_050 Hb_000138_110 Hb_000138_110 Hb_004079_030--Hb_000138_110 Hb_002027_040 Hb_002027_040 Hb_004079_030--Hb_002027_040 Hb_000059_050 Hb_000059_050 Hb_004079_030--Hb_000059_050 Hb_004079_030--Hb_002005_020 Hb_119600_070 Hb_119600_070 Hb_004079_030--Hb_119600_070 Hb_011671_450 Hb_011671_450 Hb_000922_390--Hb_011671_450 Hb_093458_050 Hb_093458_050 Hb_000922_390--Hb_093458_050 Hb_009193_030 Hb_009193_030 Hb_000922_390--Hb_009193_030 Hb_002600_040 Hb_002600_040 Hb_000922_390--Hb_002600_040 Hb_000820_090 Hb_000820_090 Hb_000922_390--Hb_000820_090 Hb_020805_130 Hb_020805_130 Hb_001507_040--Hb_020805_130 Hb_001507_040--Hb_008616_070 Hb_002660_070 Hb_002660_070 Hb_001507_040--Hb_002660_070 Hb_001507_040--Hb_000445_040 Hb_000165_160 Hb_000165_160 Hb_001507_040--Hb_000165_160 Hb_006615_020 Hb_006615_020 Hb_001507_040--Hb_006615_020 Hb_012325_020 Hb_012325_020 Hb_000445_040--Hb_012325_020 Hb_000445_040--Hb_000165_160 Hb_000445_040--Hb_020805_130 Hb_001318_270 Hb_001318_270 Hb_000445_040--Hb_001318_270 Hb_002830_030 Hb_002830_030 Hb_000445_040--Hb_002830_030 Hb_008616_070--Hb_002660_070 Hb_008616_070--Hb_020805_130 Hb_004705_120 Hb_004705_120 Hb_008616_070--Hb_004705_120 Hb_001904_090 Hb_001904_090 Hb_008616_070--Hb_001904_090 Hb_015778_010 Hb_015778_010 Hb_008616_070--Hb_015778_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.0824 15.6338 16.6309 27.8522 30.7122 26.1933
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
41.025 42.7227 102.249 43.2108 24.5143

CAGE analysis