Hb_001811_040

Information

Type -
Description -
Location Contig1811: 22662-33732
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001811_040 0.0 - - -
2 Hb_008078_030 0.1965406426 - - -
3 Hb_017417_010 0.2007509446 - - -
4 Hb_145761_010 0.2390072586 - - -
5 Hb_000922_150 0.2446517812 - - -
6 Hb_004048_140 0.2478069644 - - -
7 Hb_000183_070 0.2484958012 - - -
8 Hb_003788_040 0.2513500492 - - -
9 Hb_001437_300 0.2528189473 - - -
10 Hb_000300_380 0.2574542375 - - -
11 Hb_006452_190 0.2582837538 - - PREDICTED: 3-isopropylmalate dehydrogenase 2, chloroplastic-like [Jatropha curcas]
12 Hb_000977_140 0.2592359267 - - PREDICTED: uncharacterized protein LOC105801335 [Gossypium raimondii]
13 Hb_007017_060 0.2608361251 - - PREDICTED: 5-formyltetrahydrofolate cyclo-ligase, mitochondrial-like [Jatropha curcas]
14 Hb_142522_010 0.2648694368 - - -
15 Hb_080083_010 0.2653081936 - - -
16 Hb_017438_020 0.2672467945 - - -
17 Hb_002045_270 0.2683780797 - - hypothetical protein JCGZ_21864 [Jatropha curcas]
18 Hb_000188_190 0.2687575682 - - -
19 Hb_000668_010 0.2696118187 - - PREDICTED: probable beta-D-xylosidase 7 [Jatropha curcas]
20 Hb_004204_190 0.2725481185 - - putative iron-sulfur cluster biosynthesis protein Isd11 [Marssonina brunnea f. sp. 'multigermtubi' MB_m1]

Gene co-expression network

sample Hb_001811_040 Hb_001811_040 Hb_008078_030 Hb_008078_030 Hb_001811_040--Hb_008078_030 Hb_017417_010 Hb_017417_010 Hb_001811_040--Hb_017417_010 Hb_145761_010 Hb_145761_010 Hb_001811_040--Hb_145761_010 Hb_000922_150 Hb_000922_150 Hb_001811_040--Hb_000922_150 Hb_004048_140 Hb_004048_140 Hb_001811_040--Hb_004048_140 Hb_000183_070 Hb_000183_070 Hb_001811_040--Hb_000183_070 Hb_011161_070 Hb_011161_070 Hb_008078_030--Hb_011161_070 Hb_003029_080 Hb_003029_080 Hb_008078_030--Hb_003029_080 Hb_142522_010 Hb_142522_010 Hb_008078_030--Hb_142522_010 Hb_008078_030--Hb_145761_010 Hb_000221_100 Hb_000221_100 Hb_008078_030--Hb_000221_100 Hb_000668_010 Hb_000668_010 Hb_017417_010--Hb_000668_010 Hb_017417_010--Hb_000922_150 Hb_017417_010--Hb_004048_140 Hb_017417_010--Hb_000183_070 Hb_019936_010 Hb_019936_010 Hb_017417_010--Hb_019936_010 Hb_005714_040 Hb_005714_040 Hb_017417_010--Hb_005714_040 Hb_145761_010--Hb_000221_100 Hb_000680_150 Hb_000680_150 Hb_145761_010--Hb_000680_150 Hb_003777_070 Hb_003777_070 Hb_145761_010--Hb_003777_070 Hb_002918_280 Hb_002918_280 Hb_145761_010--Hb_002918_280 Hb_000977_140 Hb_000977_140 Hb_145761_010--Hb_000977_140 Hb_145761_010--Hb_000183_070 Hb_017438_020 Hb_017438_020 Hb_000922_150--Hb_017438_020 Hb_000258_130 Hb_000258_130 Hb_000922_150--Hb_000258_130 Hb_000300_380 Hb_000300_380 Hb_000922_150--Hb_000300_380 Hb_004374_050 Hb_004374_050 Hb_000922_150--Hb_004374_050 Hb_000922_150--Hb_000183_070 Hb_005015_010 Hb_005015_010 Hb_000922_150--Hb_005015_010 Hb_007017_060 Hb_007017_060 Hb_004048_140--Hb_007017_060 Hb_009801_010 Hb_009801_010 Hb_004048_140--Hb_009801_010 Hb_001473_190 Hb_001473_190 Hb_004048_140--Hb_001473_190 Hb_004324_020 Hb_004324_020 Hb_004048_140--Hb_004324_020 Hb_107847_010 Hb_107847_010 Hb_004048_140--Hb_107847_010 Hb_000183_070--Hb_005714_040 Hb_001437_300 Hb_001437_300 Hb_000183_070--Hb_001437_300 Hb_000183_070--Hb_005015_010 Hb_006501_150 Hb_006501_150 Hb_000183_070--Hb_006501_150 Hb_006452_190 Hb_006452_190 Hb_000183_070--Hb_006452_190 Hb_005389_140 Hb_005389_140 Hb_000183_070--Hb_005389_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.45339 0.080841 0 0 0.56124 0.202514
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.221137 0.434432 0 0.0357689 0.166444

CAGE analysis