Hb_001811_060

Information

Type -
Description -
Location Contig1811: 42341-44198
Sequence    

Annotation

kegg
ID pop:POPTR_0007s03170g
description POPTRDRAFT_718517; hypothetical protein
nr
ID XP_012081369.1
description PREDICTED: nicotinamidase 1-like isoform X1 [Jatropha curcas]
swissprot
ID Q8S8F9
description Nicotinamidase 1 OS=Arabidopsis thaliana GN=NIC1 PE=1 SV=1
trembl
ID A0A067K1I1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18759 PE=4 SV=1
Gene Ontology
ID GO:0003824
description nicotinamidase 1 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17568: 42194-44240
cDNA
(Sanger)
(ID:Location)		 015_C21.ab1: 43194-44104 , 018_O18.ab1: 43157-44111 , 026_K13.ab1: 43428-44032 , 035_C09.ab1: 42455-44111 , 049_J02.ab1: 42451-44036

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001811_060 0.0 - - PREDICTED: nicotinamidase 1-like isoform X1 [Jatropha curcas]
2 Hb_000256_270 0.1201418056 - - PREDICTED: large proline-rich protein bag6-B isoform X1 [Jatropha curcas]
3 Hb_006901_040 0.1324698426 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000185_090 0.1347242331 desease resistance Gene Name: CDC48_N PREDICTED: cell division cycle protein 48 homolog [Jatropha curcas]
5 Hb_002918_070 0.1361598494 - - hypothetical protein POPTR_0011s05530g [Populus trichocarpa]
6 Hb_000213_060 0.1410378226 - - PREDICTED: RRP12-like protein isoform X1 [Jatropha curcas]
7 Hb_000608_340 0.1432225484 - - PREDICTED: putative RNA-binding protein Luc7-like 2 [Populus euphratica]
8 Hb_000771_160 0.1447343721 - - PREDICTED: abscisic acid receptor PYL8 [Jatropha curcas]
9 Hb_000212_280 0.1459504181 - - PREDICTED: putative RNA-binding protein Luc7-like 2 [Gossypium raimondii]
10 Hb_002374_150 0.1495712342 - - PREDICTED: SWI/SNF complex subunit SWI3C isoform X1 [Jatropha curcas]
11 Hb_003666_050 0.1527265601 - - PREDICTED: NASP-related protein sim3 [Jatropha curcas]
12 Hb_000211_090 0.1527753438 - - hypothetical protein PHAVU_011G023400g, partial [Phaseolus vulgaris]
13 Hb_057490_010 0.1535028858 - - PREDICTED: mannose-1-phosphate guanyltransferase alpha [Jatropha curcas]
14 Hb_000792_110 0.1548588906 - - PREDICTED: E3 ubiquitin-protein ligase Hakai [Jatropha curcas]
15 Hb_113216_010 0.1549775278 - - PREDICTED: calcium-dependent protein kinase 26-like [Jatropha curcas]
16 Hb_001477_010 0.1552294378 - - PREDICTED: dnaJ homolog subfamily B member 13-like [Cicer arietinum]
17 Hb_000016_180 0.1572973564 - - PREDICTED: calcium-dependent protein kinase 26-like [Jatropha curcas]
18 Hb_000779_040 0.1578906193 - - PREDICTED: protein FLX-like 4 [Jatropha curcas]
19 Hb_002955_010 0.1595608233 - - PREDICTED: Werner syndrome ATP-dependent helicase homolog [Jatropha curcas]
20 Hb_035360_010 0.1595643984 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]

Gene co-expression network

sample Hb_001811_060 Hb_001811_060 Hb_000256_270 Hb_000256_270 Hb_001811_060--Hb_000256_270 Hb_006901_040 Hb_006901_040 Hb_001811_060--Hb_006901_040 Hb_000185_090 Hb_000185_090 Hb_001811_060--Hb_000185_090 Hb_002918_070 Hb_002918_070 Hb_001811_060--Hb_002918_070 Hb_000213_060 Hb_000213_060 Hb_001811_060--Hb_000213_060 Hb_000608_340 Hb_000608_340 Hb_001811_060--Hb_000608_340 Hb_002955_010 Hb_002955_010 Hb_000256_270--Hb_002955_010 Hb_001477_010 Hb_001477_010 Hb_000256_270--Hb_001477_010 Hb_000565_020 Hb_000565_020 Hb_000256_270--Hb_000565_020 Hb_023327_030 Hb_023327_030 Hb_000256_270--Hb_023327_030 Hb_113216_010 Hb_113216_010 Hb_000256_270--Hb_113216_010 Hb_000372_040 Hb_000372_040 Hb_000256_270--Hb_000372_040 Hb_000212_280 Hb_000212_280 Hb_006901_040--Hb_000212_280 Hb_006901_040--Hb_113216_010 Hb_002675_190 Hb_002675_190 Hb_006901_040--Hb_002675_190 Hb_000016_180 Hb_000016_180 Hb_006901_040--Hb_000016_180 Hb_006901_040--Hb_000213_060 Hb_174865_050 Hb_174865_050 Hb_006901_040--Hb_174865_050 Hb_000185_090--Hb_113216_010 Hb_000211_090 Hb_000211_090 Hb_000185_090--Hb_000211_090 Hb_003666_050 Hb_003666_050 Hb_000185_090--Hb_003666_050 Hb_000779_040 Hb_000779_040 Hb_000185_090--Hb_000779_040 Hb_000185_090--Hb_000016_180 Hb_019871_020 Hb_019871_020 Hb_000185_090--Hb_019871_020 Hb_005000_270 Hb_005000_270 Hb_002918_070--Hb_005000_270 Hb_002918_070--Hb_000211_090 Hb_002918_070--Hb_000212_280 Hb_001486_120 Hb_001486_120 Hb_002918_070--Hb_001486_120 Hb_002918_070--Hb_000779_040 Hb_000134_360 Hb_000134_360 Hb_002918_070--Hb_000134_360 Hb_010189_010 Hb_010189_010 Hb_000213_060--Hb_010189_010 Hb_000213_060--Hb_113216_010 Hb_000213_060--Hb_000016_180 Hb_000213_060--Hb_000185_090 Hb_000466_060 Hb_000466_060 Hb_000213_060--Hb_000466_060 Hb_000213_060--Hb_002918_070 Hb_000608_340--Hb_000779_040 Hb_000608_340--Hb_019871_020 Hb_002374_150 Hb_002374_150 Hb_000608_340--Hb_002374_150 Hb_000608_340--Hb_003666_050 Hb_000619_070 Hb_000619_070 Hb_000608_340--Hb_000619_070 Hb_035360_010 Hb_035360_010 Hb_000608_340--Hb_035360_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
492.742 167.569 45.3359 57.2879 855.612 1078.64
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
375.809 52.2845 61.0757 252.702 19.9079

CAGE analysis