Hb_001811_120

Information

Type -
Description -
Location Contig1811: 69171-75723
Sequence    

Annotation

kegg
ID rcu:RCOM_0886780
description Poly(rC)-binding protein, putative
nr
ID XP_012081372.1
description PREDICTED: KH domain-containing protein At4g18375 isoform X1 [Jatropha curcas]
swissprot
ID P58223
description KH domain-containing protein At4g18375 OS=Arabidopsis thaliana GN=At4g18375 PE=2 SV=1
trembl
ID A0A067KDQ7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18761 PE=4 SV=1
Gene Ontology
ID GO:0003723
description kh domain-containing protein at4g18375 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17573: 70049-70814 , PASA_asmbl_17574: 71180-75656 , PASA_asmbl_17575: 73345-79569
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001811_120 0.0 - - PREDICTED: KH domain-containing protein At4g18375 isoform X1 [Jatropha curcas]
2 Hb_000475_020 0.0408970401 - - PREDICTED: dehydrogenase/reductase SDR family member on chromosome X homolog isoform X2 [Jatropha curcas]
3 Hb_002471_210 0.0631985052 - - PREDICTED: THO complex subunit 2 [Jatropha curcas]
4 Hb_000487_220 0.0748508215 - - eukaryotic translation elongation factor, putative [Ricinus communis]
5 Hb_000250_070 0.077126115 - - PREDICTED: E3 ubiquitin-protein ligase listerin [Jatropha curcas]
6 Hb_007904_180 0.0804117239 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 6-like [Jatropha curcas]
7 Hb_002291_070 0.0815050625 - - PREDICTED: dentin sialophosphoprotein [Prunus mume]
8 Hb_002084_040 0.0816873706 - - PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Jatropha curcas]
9 Hb_003029_130 0.0826318188 - - carboxypeptidase regulatory region-containingprotein, putative [Ricinus communis]
10 Hb_102269_010 0.0859983945 - - hypothetical protein POPTR_0006s28940g [Populus trichocarpa]
11 Hb_000640_200 0.0865913263 - - hypothetical protein RCOM_1346600 [Ricinus communis]
12 Hb_000096_180 0.0872238252 - - PREDICTED: pentatricopeptide repeat-containing protein At5g67570, chloroplastic-like isoform X1 [Jatropha curcas]
13 Hb_007849_020 0.0878825056 transcription factor TF Family: MYB cell division control protein, putative [Ricinus communis]
14 Hb_003656_180 0.0898561748 - - PREDICTED: uncharacterized protein LOC105637927 [Jatropha curcas]
15 Hb_004037_030 0.0908065639 - - PREDICTED: DNA repair endonuclease UVH1 isoform X2 [Jatropha curcas]
16 Hb_000813_100 0.0937636896 - - PREDICTED: uncharacterized protein LOC105631583 isoform X2 [Jatropha curcas]
17 Hb_000347_570 0.0948376978 - - PREDICTED: transcription initiation factor TFIID subunit 12b isoform X1 [Jatropha curcas]
18 Hb_010128_120 0.0954779254 - - hypothetical protein JCGZ_23167 [Jatropha curcas]
19 Hb_002411_120 0.0960175421 - - PREDICTED: uncharacterized protein LOC105631645 [Jatropha curcas]
20 Hb_003847_120 0.0961948016 - - WD-repeat protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001811_120 Hb_001811_120 Hb_000475_020 Hb_000475_020 Hb_001811_120--Hb_000475_020 Hb_002471_210 Hb_002471_210 Hb_001811_120--Hb_002471_210 Hb_000487_220 Hb_000487_220 Hb_001811_120--Hb_000487_220 Hb_000250_070 Hb_000250_070 Hb_001811_120--Hb_000250_070 Hb_007904_180 Hb_007904_180 Hb_001811_120--Hb_007904_180 Hb_002291_070 Hb_002291_070 Hb_001811_120--Hb_002291_070 Hb_000475_020--Hb_002471_210 Hb_000475_020--Hb_000250_070 Hb_007849_020 Hb_007849_020 Hb_000475_020--Hb_007849_020 Hb_000475_020--Hb_002291_070 Hb_147737_010 Hb_147737_010 Hb_000475_020--Hb_147737_010 Hb_002471_210--Hb_007849_020 Hb_002471_210--Hb_002291_070 Hb_002471_210--Hb_000250_070 Hb_001322_210 Hb_001322_210 Hb_002471_210--Hb_001322_210 Hb_003029_130 Hb_003029_130 Hb_000487_220--Hb_003029_130 Hb_000487_220--Hb_000475_020 Hb_000504_150 Hb_000504_150 Hb_000487_220--Hb_000504_150 Hb_004970_160 Hb_004970_160 Hb_000487_220--Hb_004970_160 Hb_000209_070 Hb_000209_070 Hb_000487_220--Hb_000209_070 Hb_000250_070--Hb_007849_020 Hb_000250_070--Hb_002291_070 Hb_006816_300 Hb_006816_300 Hb_000250_070--Hb_006816_300 Hb_004037_030 Hb_004037_030 Hb_007904_180--Hb_004037_030 Hb_007904_180--Hb_000475_020 Hb_000002_440 Hb_000002_440 Hb_007904_180--Hb_000002_440 Hb_000813_100 Hb_000813_100 Hb_007904_180--Hb_000813_100 Hb_007904_180--Hb_006816_300 Hb_002291_070--Hb_007849_020 Hb_000780_220 Hb_000780_220 Hb_002291_070--Hb_000780_220 Hb_002291_070--Hb_001322_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
44.95 40.8199 12.8783 15.0733 51.4435 76.8533
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.7357 10.3362 15.8303 19.3429 29.094

CAGE analysis