Hb_001811_130

Information

Type -
Description -
Location Contig1811: 77687-80828
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17575: 73345-79569 , PASA_asmbl_17579: 77799-78043
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001811_130 0.0 - - -
2 Hb_025214_090 0.288980766 - - clathrin assembly protein, putative [Ricinus communis]
3 Hb_000045_150 0.2925839482 - - PREDICTED: uncharacterized protein LOC105646518 [Jatropha curcas]
4 Hb_015909_010 0.3108049441 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
5 Hb_005269_030 0.3298189844 - - cysteine protease, putative [Ricinus communis]
6 Hb_002974_040 0.3325909842 - - GRF zinc finger containing protein [Medicago truncatula]
7 Hb_000304_030 0.3357522556 - - PREDICTED: seed maturation protein PM36 [Jatropha curcas]
8 Hb_000318_480 0.3410771217 - - PREDICTED: RING-H2 finger protein ATL65 [Jatropha curcas]
9 Hb_163837_010 0.3426031276 - - PREDICTED: putative F-box protein At1g65770 [Eucalyptus grandis]
10 Hb_000002_400 0.3445447295 transcription factor TF Family: Orphans PREDICTED: ethylene receptor 2 [Jatropha curcas]
11 Hb_002026_060 0.3450737391 - - PREDICTED: uncharacterized protein LOC105645786 [Jatropha curcas]
12 Hb_000078_050 0.3475075028 transcription factor TF Family: MYB PREDICTED: transcription factor MYB82 [Jatropha curcas]
13 Hb_000479_320 0.3493300943 - - PREDICTED: pentatricopeptide repeat-containing protein At1g06140, mitochondrial-like [Jatropha curcas]
14 Hb_159921_010 0.3505678095 - - -
15 Hb_005276_170 0.3512911481 - - PREDICTED: mitochondrial Rho GTPase 2 isoform X1 [Jatropha curcas]
16 Hb_010883_200 0.3516677518 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase [Jatropha curcas]
17 Hb_001124_040 0.3527401836 - - PREDICTED: uncharacterized protein LOC103413595 [Malus domestica]
18 Hb_002267_080 0.353057002 - - PREDICTED: uncharacterized protein LOC105635094 [Jatropha curcas]
19 Hb_003938_190 0.3549036747 - - PREDICTED: pentatricopeptide repeat-containing protein At1g06145-like [Jatropha curcas]
20 Hb_003609_020 0.3557064207 desease resistance Gene Name: Clusterin hypothetical protein CISIN_1g001897mg [Citrus sinensis]

Gene co-expression network

sample Hb_001811_130 Hb_001811_130 Hb_025214_090 Hb_025214_090 Hb_001811_130--Hb_025214_090 Hb_000045_150 Hb_000045_150 Hb_001811_130--Hb_000045_150 Hb_015909_010 Hb_015909_010 Hb_001811_130--Hb_015909_010 Hb_005269_030 Hb_005269_030 Hb_001811_130--Hb_005269_030 Hb_002974_040 Hb_002974_040 Hb_001811_130--Hb_002974_040 Hb_000304_030 Hb_000304_030 Hb_001811_130--Hb_000304_030 Hb_004712_170 Hb_004712_170 Hb_025214_090--Hb_004712_170 Hb_004204_050 Hb_004204_050 Hb_025214_090--Hb_004204_050 Hb_000152_510 Hb_000152_510 Hb_025214_090--Hb_000152_510 Hb_002631_320 Hb_002631_320 Hb_025214_090--Hb_002631_320 Hb_007592_020 Hb_007592_020 Hb_025214_090--Hb_007592_020 Hb_007441_110 Hb_007441_110 Hb_025214_090--Hb_007441_110 Hb_003609_020 Hb_003609_020 Hb_000045_150--Hb_003609_020 Hb_004705_140 Hb_004705_140 Hb_000045_150--Hb_004705_140 Hb_008103_120 Hb_008103_120 Hb_000045_150--Hb_008103_120 Hb_073562_010 Hb_073562_010 Hb_000045_150--Hb_073562_010 Hb_004452_010 Hb_004452_010 Hb_000045_150--Hb_004452_010 Hb_001266_060 Hb_001266_060 Hb_000045_150--Hb_001266_060 Hb_015909_010--Hb_005269_030 Hb_001391_120 Hb_001391_120 Hb_015909_010--Hb_001391_120 Hb_001414_130 Hb_001414_130 Hb_015909_010--Hb_001414_130 Hb_001798_020 Hb_001798_020 Hb_015909_010--Hb_001798_020 Hb_000160_240 Hb_000160_240 Hb_015909_010--Hb_000160_240 Hb_005276_170 Hb_005276_170 Hb_015909_010--Hb_005276_170 Hb_005269_030--Hb_001414_130 Hb_011030_030 Hb_011030_030 Hb_005269_030--Hb_011030_030 Hb_002003_110 Hb_002003_110 Hb_005269_030--Hb_002003_110 Hb_003311_050 Hb_003311_050 Hb_005269_030--Hb_003311_050 Hb_094101_010 Hb_094101_010 Hb_005269_030--Hb_094101_010 Hb_010883_200 Hb_010883_200 Hb_002974_040--Hb_010883_200 Hb_002974_040--Hb_004204_050 Hb_002974_040--Hb_002631_320 Hb_000866_280 Hb_000866_280 Hb_002974_040--Hb_000866_280 Hb_000256_140 Hb_000256_140 Hb_002974_040--Hb_000256_140 Hb_001645_140 Hb_001645_140 Hb_002974_040--Hb_001645_140 Hb_000009_050 Hb_000009_050 Hb_000304_030--Hb_000009_050 Hb_141990_040 Hb_141990_040 Hb_000304_030--Hb_141990_040 Hb_000009_180 Hb_000009_180 Hb_000304_030--Hb_000009_180 Hb_000225_060 Hb_000225_060 Hb_000304_030--Hb_000225_060 Hb_000465_300 Hb_000465_300 Hb_000304_030--Hb_000465_300 Hb_001341_100 Hb_001341_100 Hb_000304_030--Hb_001341_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.232124 0.11998 0 0.101641 0.0934331
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.191399 0.164033 0.158311 0

CAGE analysis