Hb_001811_140

Information

Type -
Description -
Location Contig1811: 78725-81584
Sequence    

Annotation

kegg
ID pop:POPTR_0007s03140g
description POPTRDRAFT_718511; hypothetical protein
nr
ID XP_002309860.1
description hypothetical protein POPTR_0007s03140g [Populus trichocarpa]
swissprot
ID Q6AVK1
description Costars family protein OS=Oryza sativa subsp. japonica GN=Os03g0690000 PE=3 SV=1
trembl
ID B9HEA7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s03140g PE=4 SV=1
Gene Ontology
ID GO:0007030
description costars family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17576: 78786-81602 , PASA_asmbl_17577: 79653-80568 , PASA_asmbl_17578: 78307-78744
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001811_140 0.0 - - hypothetical protein POPTR_0007s03140g [Populus trichocarpa]
2 Hb_002835_240 0.1080138594 - - hypothetical protein PRUPE_ppa013861mg [Prunus persica]
3 Hb_001348_180 0.113992775 - - PREDICTED: TLC domain-containing protein 2 [Jatropha curcas]
4 Hb_007811_030 0.1148368142 - - ABC transporter family protein [Hevea brasiliensis]
5 Hb_001616_080 0.1179035491 - - Oleoyl-acyl carrier protein thioesterase, putative [Ricinus communis]
6 Hb_001959_070 0.1236837823 - - PREDICTED: uncharacterized protein LOC105638451 isoform X1 [Jatropha curcas]
7 Hb_004007_160 0.1277875722 - - PREDICTED: formin-like protein 6 [Jatropha curcas]
8 Hb_000299_040 0.1281151379 - - PREDICTED: protein S-acyltransferase 10 isoform X1 [Jatropha curcas]
9 Hb_000922_330 0.1300799446 - - PREDICTED: probable BOI-related E3 ubiquitin-protein ligase 2 [Jatropha curcas]
10 Hb_000345_390 0.1323589063 - - hypothetical protein JCGZ_23349 [Jatropha curcas]
11 Hb_024682_010 0.1328750463 - - sterol isomerase, putative [Ricinus communis]
12 Hb_004619_080 0.1340382831 - - hypothetical protein PRUPE_ppa011369mg [Prunus persica]
13 Hb_000189_310 0.1355566975 - - PREDICTED: serine/threonine-protein kinase Nek1 isoform X1 [Jatropha curcas]
14 Hb_004837_030 0.1364052411 - - PREDICTED: mitochondrial tRNA-specific 2-thiouridylase 1 [Jatropha curcas]
15 Hb_068804_100 0.1372222723 - - PREDICTED: surfeit locus protein 6 [Jatropha curcas]
16 Hb_001053_180 0.1378531111 - - protein binding protein, putative [Ricinus communis]
17 Hb_007479_050 0.1383924884 - - PREDICTED: uncharacterized protein LOC105649412 [Jatropha curcas]
18 Hb_111985_050 0.1384065144 - - uroporphyrin-III methyltransferase, putative [Ricinus communis]
19 Hb_014720_160 0.1384675265 - - PREDICTED: anthranilate phosphoribosyltransferase, chloroplastic [Jatropha curcas]
20 Hb_001350_010 0.1388714526 - - PREDICTED: uncharacterized protein LOC105629383 [Jatropha curcas]

Gene co-expression network

sample Hb_001811_140 Hb_001811_140 Hb_002835_240 Hb_002835_240 Hb_001811_140--Hb_002835_240 Hb_001348_180 Hb_001348_180 Hb_001811_140--Hb_001348_180 Hb_007811_030 Hb_007811_030 Hb_001811_140--Hb_007811_030 Hb_001616_080 Hb_001616_080 Hb_001811_140--Hb_001616_080 Hb_001959_070 Hb_001959_070 Hb_001811_140--Hb_001959_070 Hb_004007_160 Hb_004007_160 Hb_001811_140--Hb_004007_160 Hb_000787_050 Hb_000787_050 Hb_002835_240--Hb_000787_050 Hb_003057_090 Hb_003057_090 Hb_002835_240--Hb_003057_090 Hb_000175_440 Hb_000175_440 Hb_002835_240--Hb_000175_440 Hb_012725_050 Hb_012725_050 Hb_002835_240--Hb_012725_050 Hb_013726_020 Hb_013726_020 Hb_002835_240--Hb_013726_020 Hb_008748_040 Hb_008748_040 Hb_002835_240--Hb_008748_040 Hb_001348_180--Hb_001959_070 Hb_004837_030 Hb_004837_030 Hb_001348_180--Hb_004837_030 Hb_163950_030 Hb_163950_030 Hb_001348_180--Hb_163950_030 Hb_000173_290 Hb_000173_290 Hb_001348_180--Hb_000173_290 Hb_004619_080 Hb_004619_080 Hb_001348_180--Hb_004619_080 Hb_001348_180--Hb_007811_030 Hb_000915_260 Hb_000915_260 Hb_007811_030--Hb_000915_260 Hb_001971_010 Hb_001971_010 Hb_007811_030--Hb_001971_010 Hb_008096_010 Hb_008096_010 Hb_007811_030--Hb_008096_010 Hb_000054_090 Hb_000054_090 Hb_007811_030--Hb_000054_090 Hb_007811_030--Hb_000173_290 Hb_000189_310 Hb_000189_310 Hb_001616_080--Hb_000189_310 Hb_014720_160 Hb_014720_160 Hb_001616_080--Hb_014720_160 Hb_000922_330 Hb_000922_330 Hb_001616_080--Hb_000922_330 Hb_003069_010 Hb_003069_010 Hb_001616_080--Hb_003069_010 Hb_001357_090 Hb_001357_090 Hb_001616_080--Hb_001357_090 Hb_012627_050 Hb_012627_050 Hb_001616_080--Hb_012627_050 Hb_001959_070--Hb_000173_290 Hb_001100_060 Hb_001100_060 Hb_001959_070--Hb_001100_060 Hb_002205_070 Hb_002205_070 Hb_001959_070--Hb_002205_070 Hb_001959_070--Hb_004837_030 Hb_000236_070 Hb_000236_070 Hb_001959_070--Hb_000236_070 Hb_004705_040 Hb_004705_040 Hb_004007_160--Hb_004705_040 Hb_000554_010 Hb_000554_010 Hb_004007_160--Hb_000554_010 Hb_000956_130 Hb_000956_130 Hb_004007_160--Hb_000956_130 Hb_000649_050 Hb_000649_050 Hb_004007_160--Hb_000649_050 Hb_028358_010 Hb_028358_010 Hb_004007_160--Hb_028358_010 Hb_000299_040 Hb_000299_040 Hb_004007_160--Hb_000299_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
82.1578 3.14872 40.2564 34.3632 59.4292 48.3188
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
66.7174 49.9744 40.5612 18.26 51.148

CAGE analysis