Hb_001811_150

Information

Type transcription factor
Description TF Family: C2C2-GATA
Location Contig1811: 81900-101482
Sequence    

Annotation

kegg
ID rcu:RCOM_0886650
description hypothetical protein
nr
ID XP_012081381.1
description PREDICTED: GATA transcription factor 28-like isoform X2 [Jatropha curcas]
swissprot
ID Q8H1G0
description GATA transcription factor 28 OS=Arabidopsis thaliana GN=GATA28 PE=2 SV=1
trembl
ID A0A067K4L3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18765 PE=4 SV=1
Gene Ontology
ID GO:0003700
description gata transcription factor 24-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17581: 82173-91033 , PASA_asmbl_17582: 82574-91015 , PASA_asmbl_17586: 93478-101471
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001811_150 0.0 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 28-like isoform X2 [Jatropha curcas]
2 Hb_003728_020 0.0662274964 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003728_030 0.0735248506 - - o-sialoglycoprotein endopeptidase, putative [Ricinus communis]
4 Hb_002762_060 0.0780827469 - - PREDICTED: diphthine methyltransferase homolog [Jatropha curcas]
5 Hb_033491_010 0.0788916896 - - Phosphatidylinositol N-acetylglucosaminyltransferase subunit C, putative [Ricinus communis]
6 Hb_015941_030 0.0806809297 - - unknown [Populus trichocarpa]
7 Hb_004221_010 0.0819043003 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 19-like [Jatropha curcas]
8 Hb_000272_100 0.0821952 - - PREDICTED: uncharacterized protein LOC103949110 [Pyrus x bretschneideri]
9 Hb_001584_330 0.0830777475 - - PREDICTED: shaggy-related protein kinase alpha [Jatropha curcas]
10 Hb_000732_260 0.0831820595 - - PREDICTED: telomerase Cajal body protein 1 [Jatropha curcas]
11 Hb_000032_570 0.0848321514 transcription factor TF Family: Coactivator p15 PREDICTED: RNA polymerase II transcriptional coactivator KELP [Jatropha curcas]
12 Hb_000556_020 0.0866658772 - - PREDICTED: terminal uridylyltransferase 7 [Jatropha curcas]
13 Hb_028639_060 0.087104753 - - transporter, putative [Ricinus communis]
14 Hb_002249_140 0.0872574289 - - PREDICTED: uncharacterized protein LOC105648715 [Jatropha curcas]
15 Hb_005527_050 0.088613524 - - PREDICTED: uncharacterized protein LOC105643024 [Jatropha curcas]
16 Hb_000012_090 0.0888394591 - - 3'-5' exonuclease, putative [Ricinus communis]
17 Hb_000300_280 0.0891499392 - - PREDICTED: BTB/POZ and MATH domain-containing protein 4 isoform X1 [Jatropha curcas]
18 Hb_000879_140 0.0900277957 - - PREDICTED: uncharacterized protein DDB_G0283697-like isoform X2 [Jatropha curcas]
19 Hb_010710_110 0.0902232107 - - PREDICTED: uncharacterized protein LOC103997323 [Musa acuminata subsp. malaccensis]
20 Hb_030312_040 0.0907115918 - - hypothetical protein JCGZ_04876 [Jatropha curcas]

Gene co-expression network

sample Hb_001811_150 Hb_001811_150 Hb_003728_020 Hb_003728_020 Hb_001811_150--Hb_003728_020 Hb_003728_030 Hb_003728_030 Hb_001811_150--Hb_003728_030 Hb_002762_060 Hb_002762_060 Hb_001811_150--Hb_002762_060 Hb_033491_010 Hb_033491_010 Hb_001811_150--Hb_033491_010 Hb_015941_030 Hb_015941_030 Hb_001811_150--Hb_015941_030 Hb_004221_010 Hb_004221_010 Hb_001811_150--Hb_004221_010 Hb_005527_050 Hb_005527_050 Hb_003728_020--Hb_005527_050 Hb_150069_020 Hb_150069_020 Hb_003728_020--Hb_150069_020 Hb_000032_570 Hb_000032_570 Hb_003728_020--Hb_000032_570 Hb_000012_090 Hb_000012_090 Hb_003728_020--Hb_000012_090 Hb_000322_050 Hb_000322_050 Hb_003728_020--Hb_000322_050 Hb_002030_030 Hb_002030_030 Hb_003728_030--Hb_002030_030 Hb_000483_360 Hb_000483_360 Hb_003728_030--Hb_000483_360 Hb_000556_020 Hb_000556_020 Hb_003728_030--Hb_000556_020 Hb_003994_240 Hb_003994_240 Hb_003728_030--Hb_003994_240 Hb_000300_280 Hb_000300_280 Hb_003728_030--Hb_000300_280 Hb_157854_010 Hb_157854_010 Hb_002762_060--Hb_157854_010 Hb_024835_030 Hb_024835_030 Hb_002762_060--Hb_024835_030 Hb_002762_060--Hb_004221_010 Hb_004920_040 Hb_004920_040 Hb_002762_060--Hb_004920_040 Hb_000720_120 Hb_000720_120 Hb_002762_060--Hb_000720_120 Hb_158092_070 Hb_158092_070 Hb_002762_060--Hb_158092_070 Hb_001369_060 Hb_001369_060 Hb_033491_010--Hb_001369_060 Hb_000732_260 Hb_000732_260 Hb_033491_010--Hb_000732_260 Hb_000272_100 Hb_000272_100 Hb_033491_010--Hb_000272_100 Hb_000282_060 Hb_000282_060 Hb_033491_010--Hb_000282_060 Hb_000784_090 Hb_000784_090 Hb_033491_010--Hb_000784_090 Hb_002215_050 Hb_002215_050 Hb_033491_010--Hb_002215_050 Hb_029584_080 Hb_029584_080 Hb_015941_030--Hb_029584_080 Hb_000808_040 Hb_000808_040 Hb_015941_030--Hb_000808_040 Hb_002232_170 Hb_002232_170 Hb_015941_030--Hb_002232_170 Hb_000116_110 Hb_000116_110 Hb_015941_030--Hb_000116_110 Hb_008406_160 Hb_008406_160 Hb_015941_030--Hb_008406_160 Hb_002475_160 Hb_002475_160 Hb_015941_030--Hb_002475_160 Hb_004221_010--Hb_158092_070 Hb_004055_010 Hb_004055_010 Hb_004221_010--Hb_004055_010 Hb_001248_050 Hb_001248_050 Hb_004221_010--Hb_001248_050 Hb_004221_010--Hb_000032_570 Hb_000877_060 Hb_000877_060 Hb_004221_010--Hb_000877_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
68.5553 35.0735 11.232 11.351 74.1026 71.3415
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
82.2808 50.2501 47.1283 28.9022 12.9449

CAGE analysis