Hb_001817_040

Information

Type -
Description -
Location Contig1817: 31395-44839
Sequence    

Annotation

kegg
ID rcu:RCOM_0993090
description myosin XI, putative
nr
ID XP_002521016.1
description myosin XI, putative [Ricinus communis]
swissprot
ID F4HWY6
description Myosin-11 OS=Arabidopsis thaliana GN=XI-E PE=3 SV=1
trembl
ID B9S4V9
description Myosin XI, putative OS=Ricinus communis GN=RCOM_0993090 PE=4 SV=1
Gene Ontology
ID GO:0016459
description myosin-9 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17658: 32409-34273 , PASA_asmbl_17659: 43004-44289
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001817_040 0.0 - - myosin XI, putative [Ricinus communis]
2 Hb_001504_210 0.0927692342 - - PREDICTED: probable receptor-like protein kinase At1g80640 isoform X1 [Jatropha curcas]
3 Hb_000847_130 0.1205085865 - - PREDICTED: fimbrin-2 [Jatropha curcas]
4 Hb_001140_190 0.1247596479 - - PREDICTED: A-kinase anchor protein 9 [Jatropha curcas]
5 Hb_000748_120 0.1306746519 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL1 [Jatropha curcas]
6 Hb_000071_060 0.1373763965 - - conserved hypothetical protein [Ricinus communis]
7 Hb_004007_140 0.1394263289 - - PREDICTED: cyclin-D5-1-like isoform X1 [Jatropha curcas]
8 Hb_000497_250 0.140735587 - - PREDICTED: potassium transporter 5 [Jatropha curcas]
9 Hb_000017_200 0.1410546013 - - PREDICTED: uncharacterized protein LOC105645766 [Jatropha curcas]
10 Hb_003666_070 0.1414532925 - - PREDICTED: BTB/POZ domain-containing protein At5g66560 [Jatropha curcas]
11 Hb_001186_100 0.1416143946 - - PREDICTED: uncharacterized protein LOC105640806 isoform X1 [Jatropha curcas]
12 Hb_004093_030 0.1454560619 - - hypothetical protein RCOM_1406750 [Ricinus communis]
13 Hb_010889_010 0.1493696508 - - PREDICTED: myosin-12 [Jatropha curcas]
14 Hb_001491_020 0.1495642458 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
15 Hb_000331_170 0.1497380526 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 [Jatropha curcas]
16 Hb_007617_010 0.1500749698 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH63 isoform X1 [Jatropha curcas]
17 Hb_008053_030 0.1501617929 - - Rop guanine nucleotide exchange factor, putative [Ricinus communis]
18 Hb_000964_050 0.1502739431 - - PREDICTED: uncharacterized protein LOC105628694 [Jatropha curcas]
19 Hb_004117_090 0.1510352237 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 70 [Jatropha curcas]
20 Hb_000072_230 0.1513874381 - - hypothetical protein POPTR_0004s10790g [Populus trichocarpa]

Gene co-expression network

sample Hb_001817_040 Hb_001817_040 Hb_001504_210 Hb_001504_210 Hb_001817_040--Hb_001504_210 Hb_000847_130 Hb_000847_130 Hb_001817_040--Hb_000847_130 Hb_001140_190 Hb_001140_190 Hb_001817_040--Hb_001140_190 Hb_000748_120 Hb_000748_120 Hb_001817_040--Hb_000748_120 Hb_000071_060 Hb_000071_060 Hb_001817_040--Hb_000071_060 Hb_004007_140 Hb_004007_140 Hb_001817_040--Hb_004007_140 Hb_001504_210--Hb_000847_130 Hb_001504_210--Hb_004007_140 Hb_001504_210--Hb_001140_190 Hb_001491_020 Hb_001491_020 Hb_001504_210--Hb_001491_020 Hb_001504_210--Hb_000071_060 Hb_001279_240 Hb_001279_240 Hb_000847_130--Hb_001279_240 Hb_051663_010 Hb_051663_010 Hb_000847_130--Hb_051663_010 Hb_000847_130--Hb_000748_120 Hb_000017_200 Hb_000017_200 Hb_000847_130--Hb_000017_200 Hb_001511_210 Hb_001511_210 Hb_001140_190--Hb_001511_210 Hb_000438_160 Hb_000438_160 Hb_001140_190--Hb_000438_160 Hb_005276_140 Hb_005276_140 Hb_001140_190--Hb_005276_140 Hb_001140_190--Hb_000071_060 Hb_000331_170 Hb_000331_170 Hb_001140_190--Hb_000331_170 Hb_000748_120--Hb_051663_010 Hb_041692_010 Hb_041692_010 Hb_000748_120--Hb_041692_010 Hb_005976_110 Hb_005976_110 Hb_000748_120--Hb_005976_110 Hb_007617_010 Hb_007617_010 Hb_000748_120--Hb_007617_010 Hb_000243_230 Hb_000243_230 Hb_000071_060--Hb_000243_230 Hb_008686_040 Hb_008686_040 Hb_000071_060--Hb_008686_040 Hb_000071_060--Hb_000331_170 Hb_000073_040 Hb_000073_040 Hb_000071_060--Hb_000073_040 Hb_000375_220 Hb_000375_220 Hb_000071_060--Hb_000375_220 Hb_000072_230 Hb_000072_230 Hb_000071_060--Hb_000072_230 Hb_004007_140--Hb_000438_160 Hb_004007_140--Hb_001140_190 Hb_004007_140--Hb_000847_130 Hb_004007_140--Hb_001491_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0419497 0.0404393 1.20753 0.879884 0.00560802 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0106913 0.0818883 0.0593456 0.479554

CAGE analysis